PaperBLAST
PaperBLAST Hits for GFF2918 (89 a.a., MTEAKTSLKR...)
Show query sequence
>GFF2918
MTEAKTSLKRTLVGKVVSDKRAKTVTVLVERRVKHELYDKIVAKSSKYHAHDEKSEYKMG
DVIEITESRPLSKTKNWVATRLVQKAALV
Running BLASTp...
Found 109 similar proteins in the literature:
BPSL3204 30S ribosomal protein S17 from Burkholderia pseudomallei K96243
65% identity, 94% coverage
- Unraveling the role of toxin-antitoxin systems in <i>Burkholderia pseudomallei</i>: exploring bacterial pathogenesis and interactions within the HigBA families
Chapartegui-González, Microbiology spectrum 2024 - “...as well as genes that encode for ribosomal-related proteins (BPSL2159, BPSL2515, BPSL3318, BPSL3209, BPSL3210, BPSL3213, BPSL3204, BPSL3212, BPSL3211, and BPSL1508) were found. As it is shown in Table S1, some genes are differentially expressed under different conditions, and some are present in nearly all conditions. Among...”
bglu_1g02670 30S ribosomal protein S17 from Burkholderia glumae BGR1
62% identity, 94% coverage
BCAL0243 30S ribosomal protein S17 from Burkholderia cenocepacia J2315
WQ49_RS12315 30S ribosomal protein S17 from Burkholderia cenocepacia
62% identity, 94% coverage
Q5F5T6 Small ribosomal subunit protein uS17 from Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090)
65% identity, 97% coverage
NMB0151 30S ribosomal protein S17 from Neisseria meningitidis MC58
NMA0120 30S ribosomal protein S17 from Neisseria meningitidis Z2491
65% identity, 97% coverage
A6UZJ7 Small ribosomal subunit protein uS17 from Pseudomonas aeruginosa (strain PA7)
PA4254 30S ribosomal protein S17 from Pseudomonas aeruginosa PAO1
PAK_00917 30S ribosomal protein S17 from Pseudomonas aeruginosa PAK
55% identity, 97% coverage
- Effects of resource chemistry on the composition and function of stream hyporheic biofilms
Hall, Frontiers in microbiology 2012 - “...0.7 0.6 2.7 0.6 2.3 1.2 0.0 0.0 Probable peroxiredoxin OS= Helicobacter pylo P21762|TSAA HELPY A6UZJ7 G P. aeruginosa 0.0 0.0 0.7 0.6 0.7 0.6 0.0 0.0 30S ribosomal protein S17 OS= Pseudomonas ae Q02T71|RS17 PSEAB A6UZK3 G P. aeruginosa 0.0 0.0 2.3 1.2 1.3 1.2...”
- Cold plasma effect on the proteome of Pseudomonas aeruginosa - Role for bacterioferritin
Yau, PloS one 2018 - “...protection, transport of small molecules PA3637 PyrG CTP synthase >4 Cytoplasmic Nucleotide biosynthesis and metabolism PA4254 RpsQ 30S ribosomal protein S17 >5.3 Cytoplasmic Translation, post-translational modification, degradation PA4260 RplB 50S ribosomal protein L2 11 Cytoplasmic Translation, post-translational modification, degradation PA4270 RpoB DNA-directed RNA polymerase beta chain...”
- The EAL-domain protein FcsR regulates flagella, chemotaxis and type III secretion system in Pseudomonas aeruginosa by a phosphodiesterase independent mechanism
Rossello, Scientific reports 2017 - “...PA1746 Lipoprotein 3 34 PAK_02132 PelC PA3062 30S ribosomal protein S17 3 13 PAK_00917 RpsQ PA4254 Figure 2 Quantitative analysis of proteins identified in membrane fractions of PAK and PAK/pJN-FcsR using shotgun approach. The figure shows the Volcano plot generated using the PatternLab for Proteomics TFold...”
- The Pseudomonas aeruginosa CreBC two-component system plays a major role in the response to β-lactams, fitness, biofilm growth, and global regulation
Zamorano, Antimicrobial agents and chemotherapy 2014 - “...PA3876 PA3877 PA3915 PA4110 PA4238 PA4242 PA4246 PA4247 PA4254 PA4257 PA4258 PA4260 PA4262 PA4266 PA4268 PA4272 PA4944 PA5212 creD Inner membrane protein CreD...”
- Analysis of Pseudomonas aeruginosa cell envelope proteome by capture of surface-exposed proteins on activated magnetic nanoparticles
Vecchietti, PloS one 2012 - “...PA3940 Putative DNA binding protein 3 C,1 proB PA4565 Glutamate 5-kinase ProB 2 C,2 rpsQ PA4254 30S rP S17 2 C,3 rplB PA4260 50S rP L2 2 C,3 rpmD PA4245 50S rP L30 2 C,3 rplS PA3742 50S rP L19 2 C,3 rpmF PA2970 50S rP...”
- Transcriptional and proteomic responses of Pseudomonas aeruginosa PAO1 to spaceflight conditions involve Hfq regulation and reveal a role for oxygen
Crabbé, Applied and environmental microbiology 2011 - “...PA4242 PA4243 PA4245 PA4246 PA4247 PA4248 PA4249 PA4252 PA4254 PA4257 PA4258 PA4259 PA4260 PA4261 PA4262 PA4263 PA4266 PA4267 PA4268 PA4271 PA4272 PA4274 PA4296...”
- The EAL-domain protein FcsR regulates flagella, chemotaxis and type III secretion system in Pseudomonas aeruginosa by a phosphodiesterase independent mechanism
Rossello, Scientific reports 2017 - “...15 PAK_03601 PA1746 Lipoprotein 3 34 PAK_02132 PelC PA3062 30S ribosomal protein S17 3 13 PAK_00917 RpsQ PA4254 Figure 2 Quantitative analysis of proteins identified in membrane fractions of PAK and PAK/pJN-FcsR using shotgun approach. The figure shows the Volcano plot generated using the PatternLab for...”
PP_0463 30S ribosomal protein S17 from Pseudomonas putida KT2440
PP0463 ribosomal protein S17 from Pseudomonas putida KT2440
53% identity, 97% coverage
8rwgp / Q9HWE4 8rwgp
57% identity, 87% coverage
STM3431 30S ribosomal subunit protein S17 from Salmonella typhimurium LT2
SPC_3500 30S ribosomal protein S17 from Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594
SEN3259 30S ribosomal subunit protein S17 from Salmonella enterica subsp. enterica serovar Enteritidis str. P125109
SG4008 30S ribosomal subunit protein S17 from Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91
54% identity, 89% coverage
NeaA / b3311 30S ribosomal subunit protein S17 from Escherichia coli K-12 substr. MG1655 (see 16 papers)
rpsQ / P0AG63 30S ribosomal subunit protein S17 from Escherichia coli (strain K12) (see 67 papers)
RS17_ECOLI / P0AG63 Small ribosomal subunit protein uS17; 30S ribosomal protein S17 from Escherichia coli (strain K12) (see 13 papers)
rpsQ / RF|NP_417770 30S ribosomal protein S17 from Escherichia coli K12 (see 18 papers)
BC33_RS02945 30S ribosomal protein S17 from Escherichia coli ATCC 700728
NP_417770 30S ribosomal subunit protein S17 from Escherichia coli str. K-12 substr. MG1655
b3311 30S ribosomal protein S17 from Escherichia coli str. K-12 substr. MG1655
ECs4176 30S ribosomal subunit protein S17 from Escherichia coli O157:H7 str. Sakai
54% identity, 89% coverage
- function: One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA (PubMed:4598121). Also plays a role in translational accuracy; neamine-resistant ribosomes show reduced neamine-induced misreading in vitro (PubMed:765484, PubMed:781296).
subunit: Part of the 30S ribosomal subunit (PubMed:10094780, PubMed:12244297, PubMed:12809609, PubMed:16272117, PubMed:27906160, PubMed:27906161, PubMed:27934701, PubMed:344065, PubMed:4598121, PubMed:7556101). - Transcriptomic analysis reveal differential gene expressions of Escherichia coli O157:H7 under ultrasonic stress
Li, Ultrasonics sonochemistry 2021 - “...rpsD 1.9 small subunit ribosomal protein S4 BC33_RS05990 rplM 2.4 large subunit ribosomal protein L13 BC33_RS02945 rpsQ 2.3 small subunit ribosomal protein S17 BC33_RS02880 rpsK 1.9 small subunit ribosomal protein S11 BC33_RS02865 rplQ 2.1 large subunit ribosomal protein L17 BC33_RS05995 rpsI 2.6 small subunit ribosomal protein...”
- The primary structure of protein S17 from the small ribosomal subunit of Escherichia coli.
Yaguchi, FEBS letters 1978 (PubMed)- GeneRIF: N-terminus verified by Edman degradation on mature peptide
- CRP and IHF act as host regulators in Royal Jelly's antibacterial activity
Xia, Scientific reports 2024 - “...Ribosomal subunit protein S19 rpsS 0.2 3.67E06 P0A7T7 Ribosomal subunit protein S18 rpsR 0.22 1.47E08 P0AG63 Ribosomal subunit protein S17 rpsQ 0.24 6.62E08 P0A7V0 Ribosomal subunit protein S2 rpsB 0.27 2.94E07 P0AG67 Ribosomal subunit protein S1 rpsA 0.29 5.32E06 P0ADZ4 Ribosomal subunit protein S15 rpsO 0.3...”
- Capturing Membrane Protein Ribosome Nascent Chain Complexes in a Native-like Environment for Co-translational Studies
Pellowe, Biochemistry 2020 - “...RS10, P0A7R5; RS11, P0A7R9; RS12, P0A7S3; RS13, P0A7S9; RS14, P0AG59; RS15, P0ADZ4; RS16, P0A7T3; RS17, P0AG63; RS18, P0A7T7; RS19, P0A7U3; RS20, P0A7U7; RS21, P68681; RS22, C8U8F3. Large ribosomal subunits (50S): RL1, P0A7L0; RL2, P60422; RL3, P60438; RL4, P60723; RL5, P62399; RL6, P0AG55; RL7, P0A7K2; RL9, P0A7R1;...”
- A coordinated proteomic approach for identifying proteins that interact with the E. coli ribosomal protein S12
Strader, Journal of proteome research 2013 - “...P0AG59 S14 7 146 43.5 P0ADZ4 S15 10 213 61.7 P0A7T3 S16 11 720 78 P0AG63 S17 10 274 65.1 P0A7T7 S18 10 520 84 P0A7U3 S19 10 339 70.6 P0A7U7 S20 8 225 60.9 P68679 S21 7 231 34.7 P60422 L2 12 111 43.3 P60438...”
- Depletion of the non-coding regulatory 6S RNA in E. coli causes a surprising reduction in the expression of the translation machinery
Neusser, BMC genomics 2010 - “...protein b3983 rplK 0.58 50S ribosomal protein L11 b3984 rplA 0.57 50S ribosomal protein L1 b3311 rpsQ 0.57 30S ribosomal protein S17 b2606 rplS 0.57 50S ribosomal protein L19 b3934 cytR 0.56 DNA-binding transcriptional dual regulator b2608 rimM 0.56 16S rRNA-processing protein b3636 rpmG 0.55 50S...”
- Reconfiguring the quorum-sensing regulator SdiA of Escherichia coli to control biofilm formation via indole and N-acylhomoserine lactones
Lee, Applied and environmental microbiology 2009 - “...b2661 b2662 b2663 b2724 b2873 b3012 b3049 b3175 b3230 b3311 b3426 b3447 b3453 b1488 b3540 b3541 b3542 b3588 b3704 b3722 b4051 b4067 b4069 b4119 b4149 b4187...”
- Analysis of promoter targets for Escherichia coli transcription elongation factor GreA in vivo and in vitro
Stepanova, Journal of bacteriology 2007 - “...rpsQ rpmC rplP rpsC rplV rpsS rplB rplW rplD rplC rpsJ b3311 b3312 b3313 b3314 b3315 b3316 b3317 b3318 b3319 b3320 b3321 4.2 3.1 3.5 3.2 3.3 3.1 3.1 2.9 3.0 2.3...”
- Microarray analysis of orthologous genes: conservation of the translational machinery across species at the sequence and expression level
Jiménez, Genome biology 2003 - “...L24 Ribosomal protein 11 b3310 Yes** COG0093 J4 50S ribosomal protein L14 Ribosomal protein 12 b3311 Yes** COG0186 J3 30S ribosomal protein S17 Ribosomal protein 12 b3312 Yes** COG0255 J4 50S ribosomal protein L29 Ribosomal protein 12 b3313 Yes** COG0197 J4 50S ribosomal protein L16 Ribosomal...”
- Combined, functional genomic-biochemical approach to intermediary metabolism: interaction of acivicin, a glutamine amidotransferase inhibitor, with Escherichia coli K-12
Smulski, Journal of bacteriology 2001 - “...b4200 b3341 b3306 b3230 b3321 b3297 b3298 b3307 b2609 b3311 b4202 b3316 b0023 b3065 b3175 b0146 b3908 b0120 b2533 b0053 b0002 b2607 b1265 b4054 b1637 b1617...”
- Genome-wide transcriptional profiling of the Escherichia coli responses to superoxide stress and sodium salicylate
Pomposiello, Journal of bacteriology 2001 - “...b0169 b3314 b3296 b3303 b3306 b3230 b3321 b3297 b3307 b2609 b3311 atpA atpC atpF atpH atpI b0295 fis fusA ompC ompT priB prmA pyrB rplA rplB rplC rplD rplE...”
- Global transcriptional response of Escherichia coli O157:H7 to growth transitions in glucose minimal medium
Bergholz, BMC microbiology 2007 - “...rplX -4.14 1 ECs4612 ilvB 4.41 2 ECs4175 rplN -4.46 1 ECs4633 yidB 3.85 2 ECs4176 rpsQ -4.30 1 ECs4672 glmU -2.20 1 ECs4177 rpmC -4.12 1 ECs4674 atpD -2.97 1 ECs4178 rplP -3.60 1 ECs4675 atpG -3.77 1 ECs4179 rpsC -5.07 1 ECs4676 atpA -4.02...”
3j9zSQ / P0AG63 3j9zSQ (see paper)
54% identity, 89% coverage
VP0266 ribosomal protein S17 from Vibrio parahaemolyticus RIMD 2210633
52% identity, 93% coverage
A0KF30 Small ribosomal subunit protein uS17 from Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / BCRC 13018 / CCUG 14551 / JCM 1027 / KCTC 2358 / NCIMB 9240 / NCTC 8049)
55% identity, 87% coverage
- Antibacterial Activity of Rainbow Trout Plasma: In Vitro Assays and Proteomic Analysis
Mizaeva, Animals : an open access journal from MDPI 2023 - “...[ 41 , 42 ], but the ribosomal subunit proteins S17, L9, L20, and L23 (A0KF30, A0KG69, A0KKP6, and A0KF23, respectively) were missing from the proteome of AP-treated bacteria. This indicates critical damage to the core of the biosynthetic process in A. hydrophila in AP plasma,...”
AbA118F_2932 30S ribosomal protein S17 from Acinetobacter baumannii
58% identity, 88% coverage
A1JS24 Small ribosomal subunit protein uS17 from Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
YPO0219 30S ribosomal protein S17 from Yersinia pestis CO92
YPTB3689 30S ribosomal protein S17 from Yersinia pseudotuberculosis IP 32953
54% identity, 89% coverage
SG2269 30S ribosomal protein S17 from Sodalis glossinidius str. 'morsitans'
51% identity, 89% coverage
- Quorum sensing primes the oxidative stress response in the insect endosymbiont, Sodalis glossinidius
Pontes, PloS one 2008 - “...Figure 3 ). This includes several genes encoding subunits of the 30S (SG0380, SG0412 and SG2269) and 50S ribosomal proteins (SG0133, SG1420, SG1421, SG1572, SG2207, SG2252, SG2270, SG2271 and SG2273). In addition, genes encoding a 16S rRNA pseudouridylate synthase A (SG1570), a tRNA/rRNA methyltransferase (SG1908) and...”
Q9RXJ3 Small ribosomal subunit protein uS17 from Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)
56% identity, 81% coverage
ACIAD3210 30S ribosomal protein S17 from Acinetobacter sp. ADP1
56% identity, 88% coverage
U1TYF4 Small ribosomal subunit protein uS17 from Pseudomonas simiae
52% identity, 96% coverage
HI0786 ribosomal protein S17 (rpS17) from Haemophilus influenzae Rd KW20
53% identity, 89% coverage
6v39q / B7IA30 6v39q (see paper)
57% identity, 87% coverage
Psyr_4539 Ribosomal protein S17 from Pseudomonas syringae pv. syringae B728a
51% identity, 100% coverage
VC2587 ribosomal protein S17 from Vibrio cholerae O1 biovar eltor str. N16961
52% identity, 89% coverage
RS17_THET8 / P0DOY7 Small ribosomal subunit protein uS17; 30S ribosomal protein S17 from Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8) (see 2 papers)
55% identity, 76% coverage
- function: One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform and body of the 30S subunit by bringing together and stabilizing interactions between several different RNA helices. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
subunit: Part of the 30S ribosomal subunit. Contacts protein S12
disruption phenotype: Increased generation time and a temperature- sensitive phenotype. - Fold Evolution before LUCA: Common Ancestry of SH3 Domains and OB Domains.
Alvarez-Carreño, Molecular biology and evolution 2021 - “...uS12 1VY4: AL Q5SHN3 Nucleic acid-binding proteins (2.1.1.370) 28100 3240, 5469, [7784] uS17 1VY4: AQ P0DOY7 Nucleic acid-binding proteins (2.1.1.51) 278 624, 3946, [5159] bL19 1VY4: BT P60490 SH3 (4.1.1.57) 1131 [2231], 4453, 5978 bS1 6H4N: y P0AG67 Nucleic acid-binding proteins (2.1.1.570) 276348 280307, [321332] aL14...”
5a9zBU / P0DOY7 of Thermous thermophilus ribosome bound to BipA-GDPCP (see paper)
55% identity, 77% coverage
B7C60_RS03575 30S ribosomal protein S17 from Vibrio fujianensis
51% identity, 89% coverage
Nwi_1373 Ribosomal protein S17 from Nitrobacter winogradskyi Nb-255
55% identity, 87% coverage
APL_1769 30S ribosomal protein S17 from Actinobacillus pleuropneumoniae L20
55% identity, 87% coverage
bsl5391 30S ribosomal protein S17 from Bradyrhizobium japonicum USDA 110
58% identity, 82% coverage
- Characterization of a Functional Role of the Bradyrhizobium japonicum Isocitrate Lyase in Desiccation Tolerance
Jeon, International journal of molecular sciences 2015 - “...) 50S ribosomal protein L15 1.6 bsl5382 ( rpmD ) 50S ribosomal protein L30 1.6 bsl5391 ( rpsQ ) 30S ribosomal protein S17 1.5 bsl5392 ( rpmC ) 50S ribosomal protein L29 1.8 bll5397 ( rplB ) 50S ribosomal protein L2 1.7 bll5415 ( rpl K...”
- “...4 ]. Of the 73 up-regulated genes, 28 overlapped, including five translation-related genes (bll5381, bsl5382, bsl5391, bsl5392, and bll5397), five energy metabolism genes (bll3998, bll4784, bll5655, blr6128, and blr7040), four chaperonins (blr4637, blr4653, blr5625, and blr5626), one transport (bsr4636), one nitrogen fixation (blr2764), one regulatory gene...”
Q5GWU3 Small ribosomal subunit protein uS17 from Xanthomonas oryzae pv. oryzae (strain KACC10331 / KXO85)
54% identity, 88% coverage
SO0240 ribosomal protein S17 from Shewanella oneidensis MR-1
52% identity, 87% coverage
RS17_RHOPA / Q6N4U3 Small ribosomal subunit protein uS17; 30S ribosomal protein S17; RRP-S17 from Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) (see paper)
RPA3241 30S ribosomal protein S17 from Rhodopseudomonas palustris CGA009
B3QBX1 Small ribosomal subunit protein uS17 from Rhodopseudomonas palustris (strain TIE-1)
53% identity, 82% coverage
- function: One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
subunit: Part of the 30S ribosomal subunit. - ATP Is a Major Determinant of Phototrophic Bacterial Longevity in Growth Arrest
Yin, mBio 2023 - “...30S ribosome: RPA0064, RPA0244, RPA0433, RPA1589, RPA2768, RPA2922, RPA3077, RPA3078, RPA3227, RPA3228, RPA3233, RPA3236, RPA3237, RPA3241, RPA3244, RPA3246, RPA3251, RPA3254, RPA3255, RPA4005, RPA4176, RPA4836; Photosynthesis gene cluster: RPA1505-RPA1554; ATP synthesis: RPA0175-RPA0179, RPA0843-RPA0847. 10.1128/mbio.03609-22.5 TABLES3 List of genes that are differentially expressed (> = 2-fold change, P...”
- Proteome Response of a Metabolically Flexible Anoxygenic Phototroph to Fe(II) Oxidation
Bryce, Applied and environmental microbiology 2018 (secret)
SP60_05285 30S ribosomal protein S17 from Candidatus Thioglobus autotrophicus
48% identity, 92% coverage
- Metabolic flexibility of SUP05 under low DO growth conditions
Mattes, Environmental microbiology 2021 - “...0.068 0.024 0.021 SP60_05280 ALE52666.1 50S ribosomal protein L29 0.003 0.001 0.028 0.031 0.014 0.012 SP60_05285 ALE52667.1 30S ribosomal protein S17 0.003 0.001 0.025 0.032 0.003 0.002 SP60_05290 ALE52668.1 50S ribosomal protein L14 0.005 0.001 0.036 0.058 0.003 0.002 SP60_05295 ALE52669.1 50S ribosomal protein L24 0.006...”
8crxQ / Q6A6N5 8crxQ (see paper)
49% identity, 94% coverage
PD0446 30S ribosomal protein S17 from Xylella fastidiosa Temecula1
51% identity, 87% coverage
- Csp1, a Cold Shock Protein Homolog in Xylella fastidiosa Influences Cell Attachment, Pili Formation, and Gene Expression
Wei, Microbiology spectrum 2021 - “...Outer membrane protein 597.52 309.74 0.52 PD2123 rpmH 50S ribosomal protein L34 36,412.20 19,544.34 0.54 PD0446 rpsQ 30S ribosomal protein S17 11,515.54 6,378.49 0.55 PD0451 rpsH 30S ribosomal protein S8 3,394.73 1,983.09 0.58 PD0060 fimD Outer membrane usher protein precursor 75.88 46.68 0.62 PD0452 rplF 50S...”
bhn_I2065 30S ribosomal protein S17 from Butyrivibrio hungatei
46% identity, 90% coverage
BB562_12055 30S ribosomal protein S17 from Lactiplantibacillus pentosus
45% identity, 100% coverage
- Transcriptomic Profile and Probiotic Properties of Lactiplantibacillus pentosus Pre-adapted to Edible Oils
Alonso, Frontiers in microbiology 2021 - “...was down-regulated (BB562_13370 = BB562_13420). The genes (BB562_11985, BB562_12020, BB562_12025, BB562_12030, BB562_12035, BB562_12040, BB562_12045, BB562_12050, BB562_12055, BB562_12060, BB562_12065, BB562_12070, BB562_12080, BB562_12085, BB562_12090, BB562_12095, and BB562_12100), and the genes encoding 30S and 50S ribosomal proteins involved in nucleic acid and protein synthesis were down-regulated ( Supplementary Table...”
BAB1_1246 Ribosomal protein S17 from Brucella melitensis biovar Abortus 2308
57% identity, 79% coverage
- Intracellular adaptation of Brucella abortus
Lamontagne, Journal of proteome research 2009 - “...synthesis AspB 33 BAB1_1271/BAB1_1257 Protein synthesis Protein synthesis EF-Tu 33 BAB2_0515 AA synthesis Gcvp 34 BAB1_1246 Protein synthesis SSU S17 34 BAB1_1699 AA synthesis SerC 35 BAB1_1236 Protein synthesis LSU L15p 35 BAB1_1697 AA synthesis SerA-1 36 BAB1_1259 Protein synthesis SSU S7 36 BAB1_1845 Stress response...”
TP0198 ribosomal protein S17 (rpsQ) from Treponema pallidum subsp. pallidum str. Nichols
51% identity, 88% coverage
lp_1044 ribosomal protein S17 from Lactobacillus plantarum WCFS1
45% identity, 100% coverage
8rd8QZ / A0A0M4U401 8rd8QZ (see paper)
50% identity, 83% coverage
RT0642 30S ribosomal protein S17 from Rickettsia typhi str. wilmington
54% identity, 83% coverage
T303_00580 30S ribosomal protein S17 from Streptococcus thermophilus ASCC 1275
47% identity, 91% coverage
BC0140 SSU ribosomal protein S17P from Bacillus cereus ATCC 14579
47% identity, 91% coverage
- Effects of microbial agent and microbial fertilizer input on soil microbial community structure and diversity in a peanut continuous cropping system
Ahsan, Journal of advanced research 2024 - “...a soil CAT activity, UE activity, and ACP activity assay kit (No. BC0100, BC0120, and BC0140) purchased from Solarbio Co., Ltd. (Beijing, China) as per the manufacturer's protocol. Catalytic degradation of 1mol H 2 O 2 per gram of dry-weight soil mass per day was defined...”
- Biochar immobilized plant growth-promoting rhizobacteria enhanced the physicochemical properties, agronomic characters and microbial communities during lettuce seedling
Guan, Frontiers in microbiology 2023 - “...and alkaline phosphatase (ALP) with the catalog number of BC0240, BC0120, BC0150, BC0100, BC0806, BC0880, BC0140, and BC0280, respectively. Agronomic and physicochemical properties of lettuce The plants were collected by gently shaking off the root soil and washing with distilled water. The surface moisture was blotted...”
- Effects of Insect-Resistant Maize 2A-7 Expressing mCry1Ab and mCry2Ab on the Soil Ecosystem
Yang, Plants (Basel, Switzerland) 2022 - “...soil acid phosphate activities (S-ACP) were determined with soil acid phosphatase (S-ACP) activity detection kits (BC0140, Solerbio, Beijing, China). The soil alkaline protease activities were determined with soil alkaline protease (S-ALPT) activity detection kits (BC0885, Solerbio, Beijing, China). 4.5. Determination of Microbial Functional Diversity in the...”
SMc01300 PROBABLE 30S RIBOSOMAL PROTEIN S17 from Sinorhizobium meliloti 1021
54% identity, 78% coverage
UYE_RS0128510 30S ribosomal protein S17 from Chlorogloeopsis fritschii PCC 9212
54% identity, 80% coverage
SA2038 30S ribosomal protein S17 from Staphylococcus aureus subsp. aureus N315
EKM74_RS05585 30S ribosomal protein S17 from Staphylococcus aureus
47% identity, 91% coverage
- Activity of Telavancin against Staphylococcus aureus Isolates, Including Those with Decreased Susceptibility to Ceftaroline, from Cystic Fibrosis Patients
Roch, Antimicrobial agents and chemotherapy 2018 - “...I48L rplA SA0496 LSU ribosomal protein L1p (L10Ae) A>G A>G A>G A>G A>G T92A rpsQ SA2038 SSU ribosomal protein S17p T>A T>A T>A T>A T>A I77L sigA SA1390 RNA polymerase sigma factor RpoD C>T C>T C>T C>T C>T V253I sdrC SA0519 Adhesin of unknown specificity SdrC...”
- Transcriptional profiles of the response of methicillin-resistant Staphylococcus aureus to pentacyclic triterpenoids
Chung, PloS one 2013 - “...rpsM 30S ribosomal protein S13 6.1 Translation SA1081 rpsP 30S ribosomal protein S16 2.9 Translation SA2038 rpsQ 30S ribosomal protein S17 10.2 Translation SA0354 rpsR 30S ribosomal protein S18 4.8 Translation SA2043 rpsS 30S ribosomal protein S19 4.8 Translation SA1099 rpsB 30S ribosomal protein S2 9.9...”
- Characterizing the effects of inorganic acid and alkaline shock on the Staphylococcus aureus transcriptome and messenger RNA turnover
Anderson, FEMS immunology and medical microbiology 2010 - “...acid synthase sa_c3810s3279_a_at 2.9 2.5 ND SA1963 high affinity proline permease sa_c4189s3541_a_at 4.9 2.5 2.5 SA2038 O-sialoglycoprotein endopeptidase sa_c4197s3549_at 7.3 2.5 2.5 SA2039 putative ribosomal-protein-alanine acetyltransferase sa_c9831s8573_a_at 4.2 2.5 2.5 SA2107 phosphotyrosine phosphatase sa_c4460s3803_a_at * 3.6 2.5 2.5 SA2109 modification methylase sa_c5126s4423_a_at * 4.2 2.5 2.5...”
- Microarray analysis of toxicogenomic effects of ortho-phenylphenol in Staphylococcus aureus
Jang, BMC genomics 2008 - “...ribosomal protein L24; ribosomal protein L24 (BL23) rpl X Translation, ribosomal structure and biogenesis sa_c10191s8871_a_at SA2038 0.0026 2.8 30S ribosomal protein S17; ribosomal protein S17 (BS16) rps Q Translation, ribosomal structure and biogenesis sa_c4860s4166_at SA2039 0.00204 2.5 50S ribosomal protein L29; ribosomal protein L29 rpm C...”
- Characterizing the effect of the Staphylococcus aureus virulence factor regulator, SarA, on log-phase mRNA half-lives
Roberts, Journal of bacteriology 2006 - “...SA0352 SA0504 SA2034 SA2024 SA0503 SA2025 SAS079 SA2038 SA1414 SA0506 SA0506 SA0506 SA0502 Translation elongation factor EF-P Translational elongation factor G...”
- Transcriptomic Analysis Revealed Antimicrobial Mechanisms of Lactobacillus rhamnosus SCB0119 against Escherichia coli and Staphylococcus aureus
Peng, International journal of molecular sciences 2022 - “...ribosomal protein L24 EKM74_RS05580 181.27 11.93 4136.6 837.23 4.512211 rplN ; 50S ribosomal protein L14 EKM74_RS05585 140.46 16.11 4981.9 113.47 5.148408 rpsQ ; 30S ribosomal protein S17 EKM74_RS05590 154.79 34.38 4723.29 418.72 4.931395 rpmC ; 50S ribosomal protein L29 EKM74_RS05595 194.99 8.39 3442.61 618.09 4.142009 rplP...”
FTN_0248 30S ribosomal protein S17 from Francisella tularensis subsp. novicida U112
51% identity, 85% coverage
SAUSA300_2195 30S ribosomal protein S17 from Staphylococcus aureus subsp. aureus USA300_FPR3757
A6QJ83 Small ribosomal subunit protein uS17 from Staphylococcus aureus (strain Newman)
Q8NVB4 Small ribosomal subunit protein uS17 from Staphylococcus aureus (strain MW2)
SAOUHSC_02503 30S ribosomal protein S17, putative from Staphylococcus aureus subsp. aureus NCTC 8325
SACOL2230 ribosomal protein S17 from Staphylococcus aureus subsp. aureus COL
ACIV1F_002560, USA300HOU_RS12130 30S ribosomal protein S17 from Staphylococcus aureus
47% identity, 91% coverage
- Dual Gene Expression Analysis Identifies Factors Associated with Staphylococcus aureus Virulence in Diabetic Mice
Jacquet, Infection and immunity 2019 - “...SAUSA300_1541 SAUSA300_1545 SAUSA300_0781 SAUSA300_1542 SAUSA300_2195 SAUSA300_1540 SAUSA300_0884 Downregulated SAUSA300_1218 SAUSA300_0811 SAUSA300_1971...”
- Heparin Mimics Extracellular DNA in Binding to Cell Surface-Localized Proteins and Promoting Staphylococcus aureus Biofilm Formation
Mishra, mSphere 2017 - “...SAUSA300_0801 Enterotoxin, Seq 3 3 18 NKTKKGIKLRKY SAUSA300_0883 Putative surface protein 4 5 42 None SAUSA300_2195 30S ribosomal protein S17 2 2 24 YKTHKLGKRVKYSKKYKT SAUSA300_0994 Putative pyruvate dehydrogenase E1 beta subunit 3 7 65 None SAUSA300_2164 Surface protein 2 2 24 None Cell wall fraction SAUSA300_0113...”
- Antibacterial Activity and Multi-Targeted Mechanism of Action of Suberanilic Acid Isolated from Pestalotiopsis trachycarpicola DCL44: An Endophytic Fungi from Ageratina adenophora
Wen, Molecules (Basel, Switzerland) 2024 - “...0.723 Down 0.008434244 Signal transduction Q5HEP0 vraR Response regulator protein VraR 0.816 Down 0.017176601 Translation A6QJ83 rpsQ 30S ribosomal protein S17 1.443 Up 0.023323817 A8Z339 rpmD 50S ribosomal protein L30 1.511 Up 0.010285859 Q6GJD4 rpmG3 50S ribosomal protein L33 3 0.555 Down 0.01660196 P66645 rpsI 30S...”
- “...13 A0660A2T8 cycB 0.799 0.199271957 0.797 Consistency 14 Q5HEP0 vraR 0.816 0.965351503 1.006 Consistency 15 A6QJ83 rpsQ 1.443 0.008784577 2.012 Consistency 16 A8Z339 rpmD 1.511 0.004055361 1.613 Consistency Note: Consistency....”
- Structural and Functional Dynamics of Staphylococcus aureus Biofilms and Biofilm Matrix Proteins on Different Clinical Materials
Hiltunen, Microorganisms 2019 - “...Q6GEK7 30S ribosomal protein S15 Q99UJ9 30S ribosomal protein S16 Q6GHJ7 30S ribosomal protein S17 Q8NVB4 30S ribosomal protein S18 Q6GJV1 30S ribosomal protein S19 Q6GEI7 30S ribosomal protein S2 Q6GHH9 30S ribosomal protein S20 Q99TR3 30S ribosomal protein S21 Q6GGC5 30S ribosomal protein S3 Q6GEI9...”
- Antibacterial Components and Modes of the Methanol-Phase Extract from Commelina communis Linn
Liu, Plants (Basel, Switzerland) 2023 - “...50S ribosomal protein L5 putative SAOUHSC_00017 0.419 Ribosomal protein L9 SAOUHSC_02484 0.432 Ribosomal protein L17 SAOUHSC_02503 0.442 30S ribosomal protein S17 putative SAOUHSC_02505 0.447 Ribosomal protein L16 SAOUHSC_02506 0.469 Ribosomal protein S3 SAOUHSC_02508 0.494 Ribosomal protein S19 Arginine biosynthesis SAOUHSC_01128 0.246 Ornithine carbamoyltransferase SAOUHSC_01129 0.301 Carbamate...”
- The Staphylococcus aureus LytSR two-component regulatory system affects biofilm formation
Sharma-Kuinkel, Journal of bacteriology 2009 - “...SACOL0592 SACOL2240 SACOL2214 SACOL0591 SACOL2226 SACOL1292 SACOL2230 SACOL2235 SACOL1642 SA0352 SACOL2225 SACOL0590 SACOL0593 SACOL1727 SACOL0958 rplE rplF...”
- Response of <i>Staphylococcus aureus</i> to combination of virulent bacteriophage vB_SauM-515A1 and linezolid
Abdraimova, Frontiers in microbiology 2024 - “...combined treatment, transcription of genes encoding both large (ACIV1F_000615; ACIV1F_001627; ACIV1F_002546; ACIV1F_002564) and small (ACIV1F_001630; ACIV1F_002560; ACIV1F_002565) ribosomal subunit proteins also changed, though the GO term for translation was not significantly enriched. Additionally, following 30 min of antibiotic exposure, there was increased transcription of genes encoding...”
- Absence of Protoheme IX Farnesyltransferase CtaB Causes Virulence Attenuation but Enhances Pigment Production and Persister Survival in MRSA
Xu, Frontiers in microbiology 2016 - “...Hypothetical protein USA300HOU_RS04875 fabH1 1.95 4.11E-03 3-oxoacyl-[acyl-carrier-protein] synthase USA300HOU_RS02840 rplL1 1.94 5.40E-03 Ribosomal protein L7/L12 USA300HOU_RS12130 rpsQ 1.93 5.02E-03 Ribosomal protein S17 USA300HOU_RS04900 oppD1 1.91 4.92E-03 Oligopeptide ABC superfamily ATP binding cassette transporter, ABC protein USA300HOU_RS11060 ilvD 1.89 1.79E-02 Dihydroxy-acid dehydratase USA300HOU_RS07110 dapB 1.84 1.91E-02 Dihydrodipicolinate...”
7bgdq / Q2FW15 Staphylococcus aureus 30s ribosomal subunit in presence of spermidine (body only)
47% identity, 91% coverage
SPV_0202 30S ribosomal protein S17 from Streptococcus pneumoniae
A8AZL6 Small ribosomal subunit protein uS17 from Streptococcus gordonii (strain Challis / ATCC 35105 / BCRC 15272 / CH1 / DL1 / V288)
SP_0218 30S ribosomal protein S17 from Streptococcus pneumoniae TIGR4
spr0198 30S Ribosomal protein S17 from Streptococcus pneumoniae R6
SPD_0202 ribosomal protein S17 from Streptococcus pneumoniae D39
SSA_0116 30S ribosomal protein S17, putative from Streptococcus sanguinis SK36
SGO_1976 30S ribosomal protein from Streptococcus gordonii str. Challis substr. CH1
46% identity, 91% coverage
- Refining the Pneumococcal Competence Regulon by RNA Sequencing
Slager, Journal of bacteriology 2019 - “...1.0 0.4 0.0 SPV_0200 rplP 4,329 1.0 0.6 0.0 SPV_0201 rpmC 3,060 0.9 0.7 0.0 SPV_0202 rpsQ 4,348 1.1 0.7 0.1 SPV_0203 rplN 3,640 1.1 0.7 0.1 SPV_0204 rplX 3,917 1.1 0.7 0.0 SPV_0205 rplE 2,848 1.1 0.7 0.2 SPV_0206 rpsN 2,717 1.1 0.6 0.3 SPV_0207...”
- Intracellular Ser/Thr/Tyr phosphoproteome of the oral commensal Streptococcus gordonii DL1
Robertsson, BMC microbiology 2020 - “...rpsH (SGO_1971) A8AZL1 5.3/9.48 12,500/14753 120 2 25% rS17 30S ribosomal protein S17 rpsQ (SGO_1976) A8AZL6 5.0/9.92 11,000/10010 58 1 g) 10% sys-1 Serine tRNA-ligase serS(SGO_1683) A8AYV0 5.4/5.11 48,000/48110 342 7 21% - sys-2 a) 5.7/5.11 21,000/48110 95 1 g) 2% - Protein catabolism clpp ATP-dependent...”
- Biofilm and planktonic pneumococci demonstrate disparate immunoreactivity to human convalescent sera
Sanchez, BMC microbiology 2011 - “...4 6 30S ribosomal protein S13 rpsM (SP_0234) 0 2 30S ribosomal protein S17 rpsQ (SP_0218) 0 4 50S ribosomal protein L1 rplA (SP_0631) 9 28 50S ribosomal protein L2 rplB (SP_0212) 0 7 50S ribosomal protein L3 rplC (SP_0209) 0 4 50S ribosomal protein L4...”
- Transcriptional regulation and signature patterns revealed by microarray analyses of Streptococcus pneumoniae R6 challenged with sublethal concentrations of translation inhibitors
Ng, Journal of bacteriology 2003 - “...excluded from Table 2 {e.g., spr0195 [rpsC (S3)], spr0198 [rpsQ (S17)], spr0199 [rplN (L14)], spr0202 [rpsN (S14)], and spr0203 [rpsH (S8)]}, because their...”
- The Small Molecule DAM Inhibitor, Pyrimidinedione, Disrupts Streptococcus pneumoniae Biofilm Growth In Vitro
Yadav, PloS one 2015 - “...translation -1.4 (0.006) SPD_0201 (rpmC) ribosomal protein L29 structural constituent of ribosome translation -1.5 (0.01) SPD_0202 (rpsQ) ribosomal protein S17 rRNA binding/structural constituent of ribosome translation -1.9 (0.04) SPD_0204 (rplX) ribosomal protein L24 rRNA binding/structural constituent of ribosome translation -1.7 (0.03) SPD_0083 (rpsD) ribosomal protein S4...”
- Analysis of essential gene dynamics under antibiotic stress in Streptococcus sanguinis
El-Rami, Microbiology (Reading, England) 2018 - “...( Fig. 2a , Table S1), except for nine genes: rpsN (SSA_2391), rplP (SSA_0114), rpsQ (SSA_0116), rplN (SSA_117), rplE (SSA_0119), rpsH (SSA_0120), rplF (SSA_0122), rplR (SSA_0123) and rpsE (SSA_0124). Proteomic findings showed the reduction in 29 ribosomal protein levels at all the time points, showing concurrence...”
- Intracellular Ser/Thr/Tyr phosphoproteome of the oral commensal Streptococcus gordonii DL1
Robertsson, BMC microbiology 2020 - “...S8 rpsH (SGO_1971) A8AZL1 5.3/9.48 12,500/14753 120 2 25% rS17 30S ribosomal protein S17 rpsQ (SGO_1976) A8AZL6 5.0/9.92 11,000/10010 58 1 g) 10% sys-1 Serine tRNA-ligase serS(SGO_1683) A8AYV0 5.4/5.11 48,000/48110 342 7 21% - sys-2 a) 5.7/5.11 21,000/48110 95 1 g) 2% - Protein catabolism clpp...”
RS17_BACSU / P12874 Small ribosomal subunit protein uS17; 30S ribosomal protein S17; BS16 from Bacillus subtilis (strain 168) (see paper)
BSU01250 30S ribosomal protein S17 from Bacillus subtilis subsp. subtilis str. 168
49% identity, 85% coverage
- function: One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
subunit: Part of the 30S ribosomal subunit. - Time-Course Transcriptome Analysis of Bacillus subtilis DB104 during Growth
Jun, Microorganisms 2023 - “...31 36 29 0 0 bsu00500 Starch and sucrose metabolism 11 15 11 7 0 bsu01250 Biosynthesis of nucleotide sugars 8 10 7 8 0 bsu01230 Biosynthesis of amino acids 8 10 7 8 0 bsu00541 O-Antigen nucleotide sugar biosynthesis 0 0 20 0 11 bsu02010...”
- The Blueprint of a Minimal Cell: MiniBacillus
Reuß, Microbiology and molecular biology reviews : MMBR 2016 - “...BSU01500 BSU01150 BSU01420 BSU01100 BSU01410 BSU01290 BSU16680 BSU15990 BSU01250 BSU40890 BSU01200 BSU25550 BSU25410 No Yes Yes Yes Yes Yes No Yes No Yes Yes...”
3j9wAQ / P12874 3j9wAQ (see paper)
49% identity, 85% coverage
SERP1822 ribosomal protein S17 from Staphylococcus epidermidis RP62A
47% identity, 91% coverage
CBO3472 30S ribosomal protein S17 from Clostridium botulinum A str. ATCC 3502
45% identity, 90% coverage
- Gene expression profiling of Clostridium botulinum under heat shock stress
Liang, BioMed research international 2013 - “...synthesis and modification were downregulated, including rpmE (CBO0135), rplR (CBO3465), rplO (CBO3462), rplX (CBO3470), rpsQ (CBO3472), rpsN (CBO3468), rpsC (CBO3474), and rplK (CBO3492). The downregulation of ribosomal genes indicated a temporary growth arrest, allowing the bacteria to reshuffle energy to adapt to the higher temperature [...”
FP1330 30S ribosomal protein S17 from Flavobacterium psychrophilum JIP02/86
43% identity, 94% coverage
- Stress Tolerance-Related Genetic Traits of Fish Pathogen Flavobacterium psychrophilum in a Mature Biofilm
Levipan, Frontiers in microbiology 2018 - “...GO:0003735, GO:0019843, GO:0006412 3.32 FP1329 50S ribosomal protein L14 rplN GO:0015934, GO:0003735, GO:0019843, GO:0006412 3.11 FP1330 30S ribosomal protein S17 rpsQ GO:0005840, GO:0003735, GO:0019843, GO:0006412 4.81 FP1331 50S ribosomal protein L29 rpmC GO:0005840, GO:0003735, GO:0006412 5.06 FP1332 50S ribosomal protein L16 rplP GO:0005840, GO:0000049, GO:0003735, GO:0019843,...”
BL1589 30S ribosomal protein S17 from Bifidobacterium longum NCC2705
Bbr_1632 30S ribosomal protein S17 from Bifidobacterium breve UCC2003
49% identity, 82% coverage
- Differential transcriptional response of Bifidobacterium longum to human milk, formula milk, and galactooligosaccharide
González, Applied and environmental microbiology 2008 - “...BL0675 BL0676 BL1164 BL0949-BL0950 BL1402-BL1403 BL1589 BL0197-BL0198 BL1164-BL1165 BL0716 BL0715 BL0157 BL0671-BL0672 BL0433-BL0434 BL1545-BL1546 BL0976 BL0742...”
- Genomics of Actinobacteria: tracing the evolutionary history of an ancient phylum
Ventura, Microbiology and molecular biology reviews : MMBR 2007 - “...ribosomal protein L29; PFAM_ID, Ribosomal_L29 BL1589 ......................................RpsQ; COG family, ribosomal protein S17; PFAM_ID, Ribosomal_S17...”
- Genome-Wide Search for Genes Required for Bifidobacterial Growth under Iron-Limitation
Lanigan, Frontiers in microbiology 2017 - “..., 30S ribosomal protein S5 2.2 Bbr_1583 Histidine kinase sensor of two component system 2.1 Bbr_1632 rpsQ , 30S ribosomal protein 2.1 Bbr_1675 rplL , LSU ribosomal protein L12P (L7/L12) 2.1 Bbr_1581 Narrowly conserved hypothetical membrane spanning protein 2.1 Bbr_0899 Endonuclease involved in recombination 2.1 Bbr_0843...”
SRIM_018535 30S ribosomal protein S17 from Streptomyces rimosus subsp. rimosus ATCC 10970
44% identity, 90% coverage
SCO4711 30S ribosomal protein S17 from Streptomyces coelicolor A3(2)
45% identity, 89% coverage
- The Streptomyces coelicolor Small ORF trpM Stimulates Growth and Morphological Development and Exerts Opposite Effects on Actinorhodin and Calcium-Dependent Antibiotic Production
Vassallo, Frontiers in microbiology 2020 - “...protein L3 2.53 3.36 10 6 SCO4703 50S ribosomal protein L4 1.46 1.42 10 3 SCO4711 30S ribosomal protein S17 1.53 3.01 10 2 SCO4713 50S ribosomal protein L24 1.30 6.14 10 3 SCO4735 30S ribosomal protein S9 1.61 1.18 10 6 SCO5624 30S ribosomal protein...”
- Quantitative Proteome and Phosphoproteome Analyses of Streptomyces coelicolor Reveal Proteins and Phosphoproteins Modulating Differentiation and Secondary Metabolism
Rioseras, Molecular & cellular proteomics : MCP 2018 - “...AAAEGVD pT AGAAPAASGGGGGGSYSSEGGDNSGALASDEALAALR n.s. 2.4 n.s. 5.4 SCO4703 AVD pT EGSEA n.s. 3.3 n.s. 9.6 SCO4711 SE pS NVTEETK n.s. 3.3 n.s. 10.2 Catabolism SCO1646 1 A pT R pSpT EEVEEQAQDAQASEDLK n.s. 1.1 n.s. 2.2 SCO1646 pSTEEVEEQAQDAQASEDLK n.s. 1.2 n.s. 2.3 SCO1646 A pT RSTEEVEEQAQDAQASEDLK n.s....”
- Metabolic switches and adaptations deduced from the proteomes of Streptomyces coelicolor wild type and phoP mutant grown in batch culture
Thomas, Molecular & cellular proteomics : MCP 2012 - “...SCO4718 SCO5595 SCO4091 SCO1480 SCO5077 SCO1947 SCO5624 SCO4711 SCO3906 SCO5625 SCO4809 SCO3909 SCO2736 SCO2180 SCO6279 98.03 90.81 88.81 87.87 85.6 85.28...”
- Quantitative proteomics analysis of Streptomyces coelicolor development demonstrates that onset of secondary metabolism coincides with hypha differentiation
Manteca, Molecular & cellular proteomics : MCP 2010 - “...of these proteins were ribosomal proteins (SCO4653, SCO4711, and SCO3124), glycolytic and tricarboxylic acid cycle enzymes (SCO5423, SCO2951, SCO4809, and...”
- “...32 32 5 1 1 1 1 2 1 SCO4711 SCO4653 SCO4735 SCO4718 SCO3124 SCO2620 SCO5221 SCO5625 SCO4710 SCO4719 SCO4721 SCO3909 SCO3970 SCO4713 SCO3874 SCO2562 SCO1600...”
- Comparative genomics of Streptomyces avermitilis, Streptomyces cattleya, Streptomyces maritimus and Kitasatospora aureofaciens using a Streptomyces coelicolor microarray system
Hsiao, Antonie van Leeuwenhoek 2008 - “...protein L16 0.52 0.67 1.09 1.26 SCO4710 50S ribosomal protein L29 0.33 0.06 0.19 0.41 SCO4711 30S ribosomal protein S17 0.59 0.92 0.51 0.13 SCO4712 50S ribosomal protein L14 1.05 0.35 0.48 0.82 SCO4713 50S ribosomal protein L24 1.09 0.88 0.63 0.64 SCO4714 50S ribosomal protein...”
IUJ47_RS04570 30S ribosomal protein S17 from Enterococcus faecalis
43% identity, 100% coverage
- Antibacterial Components and Modes of the Methanol-Phase Extract from Commelina communis Linn
Liu, Plants (Basel, Switzerland) 2023 - “...ribosomal protein L7/L12 IUJ47_RS04580 0.287 50S ribosomal protein L24 IUJ47_RS04660 0.287 50S ribosomal protein L17 IUJ47_RS04570 0.287 30S ribosomal protein S17 IUJ47_RS04595 0.288 30S ribosomal protein S8 IUJ47_RS04490 0.296 30S ribosomal protein S12 IUJ47_RS04600 0.298 50S ribosomal protein L6 IUJ47_RS04495 0.301 30S ribosomal protein S7 IUJ47_RS04575...”
LSA1755 30S ribosomal protein S17 from Lactobacillus sakei subsp. sakei 23K
43% identity, 100% coverage
- Global transcriptome response in Lactobacillus sakei during growth on ribose
McLeod, BMC microbiology 2011 - “...-0.6 LSA1676 rpmG2 50S ribosomal protein L33 -0.6 LSA1750 rplF 50S ribosomal protein L6 0.6 LSA1755 rpsQ 30S ribosomal protein S17 0.5 LSA1761 rplB 50S ribosomal protein L2 0.6 LSA1765 rpsJ 30S ribosomal protein S10 -0.7 Protein synthesis LSA0377 tgt Queuine tRNA-ribosyltransferase -0.6 LSA1546 gatB Glutamyl-tRNA...”
lmo2623 ribosomal protein S17 from Listeria monocytogenes EGD-e
Q71WF5 Small ribosomal subunit protein uS17 from Listeria monocytogenes serotype 4b (strain F2365)
45% identity, 97% coverage
- Synergistic Antibacterial Mechanism of Mannosylerythritol Lipid-A and Lactic Acid on Listeria monocytogenes Based on Transcriptomic Analysis
Liu, Foods (Basel, Switzerland) 2022 - “...shown in Figure 6 , we analyzed the transcription level of lmo0248 , lmo0249 , lmo2623 , lmo2628 , lmo2123 , lmo2124 , lmo2347, and lmo2348 by real-time quantitative PCR to verify the accuracy of the transcriptome data. It was highly consistent between the RNA-Seq and...”
- Proteomic Exploration of Listeria monocytogenes for the Purpose of Vaccine Designing Using a Reverse Vaccinology Approach
Srivastava, International journal of peptide research and therapeutics 2021 - “...0.683 Non-allergen 108 Q71WE5 2.321 Non-allergen 109 Q71ZR7 0.454 Non-allergen 110 Q71WF6 1.29 Non-allergen 111 Q71WF5 1.581 Non-allergen 112 Q71WH1 2.223 Non-allergen 113 Q71WG5 1.192 Non-allergen 114 Q725B8 2.188 Non-allergen 115 Q71WV5 1.028 Non-allergen 116 Q71WG0 1.557 Non-allergen 117 Q71WG2 1.87 Non-allergen 118 Q71WE8 0.989 Non-allergen...”
C9YW69 Small ribosomal subunit protein uS17 from Streptomyces scabiei (strain 87.22)
47% identity, 89% coverage
llmg_2374 30S ribosomal protein S17 from Lactococcus lactis subsp. cremoris MG1363
46% identity, 85% coverage
5myjAQ / A2RNP6 of 70S ribosome from Lactococcus lactis (see paper)
46% identity, 85% coverage
B0JHZ4 Small ribosomal subunit protein uS17 from Microcystis aeruginosa (strain NIES-843 / IAM M-2473)
55% identity, 73% coverage
MAB_3811c 30S ribosomal protein S17 from Mycobacterium abscessus ATCC 19977
42% identity, 81% coverage
ssl3437 30S ribosomal protein S17 from Synechocystis sp. PCC 6803
55% identity, 73% coverage
- Transcriptomic response to prolonged ethanol production in the cyanobacterium Synechocystis sp. PCC6803
Dienst, Biotechnology for biofuels 2014 - “...of around 9kb encoding 18 different ribosomal proteins (genes sll1799-sll1813 , ssl3432 , ssl3436 and ssl3437 ; rpl3-4-23-2-rps19-rpl22-rps3-rpl16-29-rps17-rpl14-24-5-rps8-rpl6-18-rps5-rpl15 ). This operon is followed by the secY gene, similar to the situation in Escherichia coli , where it is part of the spc operon of ribosomal proteins...”
- Proteomic analysis reveals resistance mechanism against biofuel hexane in Synechocystis sp. PCC 6803
Liu, Biotechnology for biofuels 2012 - “...Slr0628 0.38 0.35 30S ribosomal protein S14 Ssr0482 0.52 0.48 0.66 30S ribosomal protein S16 Ssl3437 0.49 0.63 30S ribosomal protein S17 Ssr1399 0.52 30S ribosomal protein S18 Sll1804 0.61 0.54 30S ribosomal protein S3 Slr0469 0.47 0.41 0.59 0.47 30S ribosomal protein S4 Sll1812 0.62...”
- Gene expression patterns of sulfur starvation in Synechocystis sp. PCC 6803
Zhang, BMC genomics 2008 - “...), slr1828( petF ), Ribosomal proteins (sll1816( rps13 ), slr1984( rps1 ), sml0006( rpl36 ), ssl3437( rps17 ), ssl3445( rpl31 ), ssr0482( rps16 )) 20 slr2075( groES ), Ribosomal proteins (sll1824, slr0628( rps14 ), ssl2233( rps20 )) The differentially expressed genes in Synechocystis sulfate deprivation time...”
- Global gene expression profiles of the cyanobacterium Synechocystis sp. strain PCC 6803 in response to irradiation with UV-B and white light
Huang, Journal of bacteriology 2002 - “...sll1801 sll1807 ssl3436 ssl3445 sll1804 sll1812 sll1809 sll1822 sll1101 ssl3437 ssl3432 0.76 0.14 0.7 0.3 0.99 0.18 0.51 0.19 0.56 0.05 0.81 0.27 0.87 0.27 0.92...”
B739_0975 30S ribosomal protein S17 from Riemerella anatipestifer RA-CH-1
42% identity, 90% coverage
AT1G49400 emb1129 (embryo defective 1129); structural constituent of ribosome from Arabidopsis thaliana
38% identity, 68% coverage
CD0081 30S ribosomal protein S17 from Clostridium difficile 630
47% identity, 83% coverage
MSMEG_1445, MSMEI_1409 30S ribosomal protein S17 from Mycolicibacterium smegmatis MC2 155
A0QSE0 Small ribosomal subunit protein uS17 from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)
MSMEG_1445 30S ribosomal protein S17 from Mycobacterium smegmatis str. MC2 155
45% identity, 80% coverage
- Interactome Analysis Identifies MSMEI_3879 as a Substrate of Mycolicibacterium smegmatis ClpC1
Ogbonna, Microbiology spectrum 2023 - “..., MSMEG_6895, MSMEI_6711 30S ribosomal protein S18 2 0.03 0.01 0.12 0.11 A0QSE0 rpsQ , MSMEG_1445, MSMEI_1409 30S ribosomal protein S17 0.02 0.01 A0QSD7 rpsC , MSMEG_1442, MSMEI_1406 30S ribosomal protein S3 0.23 0.19 0.36 0.32 A0QV03 rpmB , rpmB-3 , MSMEG_2400, MSMEI_2340 50S ribosomal protein...”
- “...MSMEG_6895, MSMEI_6711 30S ribosomal protein S18 2 0.03 0.01 0.12 0.11 A0QSE0 rpsQ , MSMEG_1445, MSMEI_1409 30S ribosomal protein S17 0.02 0.01 A0QSD7 rpsC , MSMEG_1442, MSMEI_1406 30S ribosomal protein S3 0.23 0.19 0.36 0.32 A0QV03 rpmB , rpmB-3 , MSMEG_2400, MSMEI_2340 50S ribosomal protein L28...”
- Interactome Analysis Identifies MSMEI_3879 as a Substrate of Mycolicibacterium smegmatis ClpC1
Ogbonna, Microbiology spectrum 2023 - “...rpsR2 , rpsR1 , MSMEG_6895, MSMEI_6711 30S ribosomal protein S18 2 0.03 0.01 0.12 0.11 A0QSE0 rpsQ , MSMEG_1445, MSMEI_1409 30S ribosomal protein S17 0.02 0.01 A0QSD7 rpsC , MSMEG_1442, MSMEI_1406 30S ribosomal protein S3 0.23 0.19 0.36 0.32 A0QV03 rpmB , rpmB-3 , MSMEG_2400, MSMEI_2340...”
- Gene Expression, Bacteria Viability and Survivability Following Spray Drying of Mycobacterium smegmatis
Lauten, Materials (Basel, Switzerland) 2010 - “...protein S15 rpsO 1.3 11.4 0.001 92% MSMEG_2435 ribosomal protein S16 1.8 11.1 0.003 68% MSMEG_1445 ribosomal protein S17 2.0 12.2 0.001 91% MSMEG_6065 ribosomal protein S18 rpsR -0.3 9.3 0.587 0% MSMEG_6895 ribosomal protein S18 rpsR 1.4 12.2 0.001 88% MSMEG_1440 ribosomal protein S19 rpsS...”
- Acid stress response of a mycobacterial proteome: insight from a gene ontology analysis
Roxas, International journal of clinical and experimental medicine 2009 (secret)
6dzi5 / A0QSE0 6dzi5 (see paper)
45% identity, 83% coverage
BCG_0760 putative 50S ribosomal protein S17 rpsQ from Mycobacterium bovis BCG str. Pasteur 1173P2
Rv0710 30S ribosomal protein S17 from Mycobacterium tuberculosis H37Rv
45% identity, 57% coverage
- InbR, a TetR family regulator, binds with isoniazid and influences multidrug resistance in Mycobacterium bovis BCG
Yang, Scientific reports 2015 - “...rplP 50S ribosomal protein L16 BCG_0759 1.12 1.30 Rv0709 rpmC 50S ribosomal protein L29 Up BCG_0760 1.79 1.94 Rv0710 rpsQ 30S ribosomal protein S17 9 BCG_0772 1.64 1.52 Rv0722 rpmD 50S ribosomal protein L30 NA BCG_0773 1.17 Rv0723 rplO 50S ribosomal protein L15 10 BCG_1025c 1.22...”
- The effect of growth rate on pyrazinamide activity in Mycobacterium tuberculosis - insights for early bactericidal activity?
Pullan, BMC infectious diseases 2016 - “...P66187 50S ribosomal protein L31 1.65 6.13 tRNA-Leu tRNA-Leu 2.33 5.97 tRNA-Ser tRNA-Ser 4.08 5.88 Rv0710 P95058 30S ribosomal protein S17 1.65 5.43 tRNA-Pro tRNA-Pro 3.70 5.20 Rv0705 P0A5X4 30S ribosomal protein S19 1.44 4.83 tRNA-Tyr tRNA-Tyr 3.56 4.82 Rv0709 P95057 50S ribosomal protein L29 4.32...”
- “...L30 1.14 2.42 tRNA-Val tRNA-Val 1.79 2.45 Rv0709 P95057 50S ribosomal protein L29 1.90 2.72 Rv0710 P95058 30S ribosomal protein S17 1.10 2.04 tRNA-Met tRNA-Met Genes encoding tRNAs or ribosome component proteins that were down-regulated by at least two fold (with an ANOVA p value of...”
- InbR, a TetR family regulator, binds with isoniazid and influences multidrug resistance in Mycobacterium bovis BCG
Yang, Scientific reports 2015 - “...protein L16 BCG_0759 1.12 1.30 Rv0709 rpmC 50S ribosomal protein L29 Up BCG_0760 1.79 1.94 Rv0710 rpsQ 30S ribosomal protein S17 9 BCG_0772 1.64 1.52 Rv0722 rpmD 50S ribosomal protein L30 NA BCG_0773 1.17 Rv0723 rplO 50S ribosomal protein L15 10 BCG_1025c 1.22 2.25 Rv0971c echA7...”
- Identification of idiosyncratic Mycobacterium tuberculosis ribosomal protein subunits with implications in extraribosomal function, persistence, and drug resistance based on transcriptome data
Fan, Journal of biomolecular structure & dynamics 2014 (PubMed)- “...rpsC), L16 (Rv0708, rplP), L29 (Rv0709, rpmC), S17 (Rv0710, rpsQ), S14 (Rv2056c, rpsN2), and L33 (Rv2057c, rpmG1), were found to behave idiosyncratically. The...”
- “...S3), Rv0708 (rplP, L16), Rv0709 (rpmC, L29), and Rv0710 (rpsQ, S17) were downregulated under capreomycin treatment; Rv0708 (rplP, L16), Rv0709 (rpmC, L29),...”
- Genome-wide discovery of small RNAs in Mycobacterium tuberculosis
Miotto, PloS one 2012 - “...629975 + 98 Neg 5 UTR, Rv0538 106 806185 806218 + 33 Neg 3 UTR, Rv0710 135 1040645 1040938 + 293 45, 250 sigA Yes AS to Rv0932c 149 1200555 1200605 + 50 75 Intergenic 161 e 1287126 1287201 + 75 180, 160 sigA Yes Intergenic...”
- CtpV: a putative copper exporter required for full virulence of Mycobacterium tuberculosis
Ward, Molecular microbiology 2010 - “...Stress rv0055 RpsR 3.29 30S ribosomal protein S18 rv0056 RplI 1.75 50S ribosomal protein L9 rv0710 RpsQ 1.52 30S ribosomal protein S17 rv0719 RplF 1.65 50S ribosomal protein L6 rv1298 RpmE 2.11 50S ribosomal protein L31 rv1471 TrxB 1.89 Thioredoxin reductase rv2109c PrcA 2.13 Proteasome [alpha]-type...”
- Descriptive proteomic analysis shows protein variability between closely related clinical isolates of Mycobacterium tuberculosis
Mehaffy, Proteomics 2010 - “...] 15607843 a Rv0703 rplW 0.89 1.00 1.20 2 1 11.00 [ 25 ] 15607850 Rv0710 rpsQ 0.61 0.87 0.98 2 3 17.65 15607858 Rv0718 rpsH 0.77 0.82 0.99 2 5 42.42 15607859 Rv0719 rplF 0.84 1.05 1.29 2 3 21.23 [ 25 ] 15607873 Rv0733...”
- Mycobacterium tuberculosis modulates its cell surface via an oligopeptide permease (Opp) transport system
Flores-Valdez, FASEB journal : official publication of the Federation of American Societies for Experimental Biology 2009 - “...Rv0593c Rv0595c Rv0651 Rv0693 Rv0700 Rv0702 Rv0704 Rv0706 Rv0708 Rv0710 Rv0714 Rv0716 Rv0722 Rv0859 Rv0860 Rv0878c Rv0963c 1.3 1.6 1.1 1.3 1.1 1.4 1.1 1.1 1.2...”
- Functional genomics reveals extended roles of the Mycobacterium tuberculosis stress response factor sigmaH
Mehra, Journal of bacteriology 2009 - “...Information pathways Rv0651 Rv2442c Rv1015c Rv2057c Rv0718 Rv2055c Rv0710 rplJ rplU rplY rpmG1 rpsH rpsR2 rpsQ 1.022 0.037 1.051 0.023 0.875 0.008 1.032 0.085...”
- More
MT0737 30S ribosomal protein S17 from Mycobacterium tuberculosis CDC1551
45% identity, 58% coverage
- Conserved codon composition of ribosomal protein coding genes in Escherichia coli, Mycobacterium tuberculosis and Saccharomyces cerevisiae: lessons from supervised machine learning in functional genomics
Lin, Nucleic acids research 2002 - “...MT3566, MT0710, MT3567, MT2117, MT0742.1, MT2855, MT2977, MT0737, MT2116, MT0061, MT0732, MT2958, MT2485, MT0734, MT3565, MT0746, MT0059, MT0711, MT0743, MT3547...”
7mscq / P9WH51 70SIC in complex with MtbEttA at Pre_R0 state (see paper)
45% identity, 82% coverage
MAV_4462 30S ribosomal protein S17 from Mycobacterium avium 104
46% identity, 67% coverage
6xywBp / Q9XIA6 6xywBp (see paper)
39% identity, 87% coverage
6o8wq / A0A1B4XKS3 6o8wq (see paper)
48% identity, 82% coverage
HP1310 ribosomal protein S17 (rps17) from Helicobacter pylori 26695
P66449 Small ribosomal subunit protein uS17 from Helicobacter pylori (strain ATCC 700392 / 26695)
jhp1230 30S RIBOSOMAL PROTEIN S17 from Helicobacter pylori J99
51% identity, 78% coverage
cg0604 30S ribosomal protein S17 from Corynebacterium glutamicum ATCC 13032
44% identity, 93% coverage
- Comprehensive analysis of the Corynebacterium glutamicum transcriptome using an improved RNAseq technique
Pfeifer-Sancar, BMC genomics 2013 - “...cg3011 to cg3020 10 - detected posttranslational modification, protein turnover, chaperones; unknown function cg0593 to cg0604 11 + detected translation, ribosomal structure and biogenesis (ribosomal proteins) cg1683 to cg1693 11 - detected various c (protein secretion by Tat pathway, pupylation and proteasome functions) cg2578 to cg2589...”
- Functional genomics of pH homeostasis in Corynebacterium glutamicum revealed novel links between pH response, oxidative stress, iron homeostasis and methionine synthesis
Follmann, BMC genomics 2009 - “...protein L29 0 -1.01 -0.20 - -0.8 - - - - - - - 25 cg0604 g rpsQ 30S ribosomal protein S17 0 -1.18 -0.21 3.3 3.2 2.8 - - 0.0 - - - 26 cg0623 h ABC-type cobalt exporter unit 8 -1.05 -1.35 - -...”
- The global repressor SugR controls expression of genes of glycolysis and of the L-lactate dehydrogenase LdhA in Corynebacterium glutamicum
Engels, Journal of bacteriology 2008 - “...cg1112 cg0791 cg0634 cg2430 cg1111 cg3227 cg2419 cg1379 cg0604 cg1977 cg1537 cg1673 cg2425 cg3368 cg2071 cg2115 mRNA ratio (sugR mutant/WT)c 50.7 47.8 32.3 26.9...”
- Global gene expression during stringent response in Corynebacterium glutamicum in presence and absence of the rel gene encoding (p)ppGpp synthase
Brockmann-Gretza, BMC genomics 2006 - “...rplV 50S ribosomal protein L22 J cg0602 0.58 0.28 rplP 50S ribosomal protein L16 J cg0604 0.46 0.47 rpsQ 30S ribosomal protein S17 J cg0608 0.49 0.26 rplN 50S ribosomal protein L14 J cg0609 0.59 0.45 rplX 50S ribosomal protein L24 J cg0610 0.49 0.34 rplE...”
8uu7q / A0A0U5ADR4 8uu7q (see paper)
52% identity, 78% coverage
YP_909193 30S ribosomal protein S17 from Bifidobacterium adolescentis ATCC 15703
45% identity, 82% coverage
RR17_ARATH / P16180 Small ribosomal subunit protein uS17c; 30S ribosomal protein S17, chloroplastic; CS17 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
rps17 / CAA77502.1 Plastid ribosomal protein CS17 from Arabidopsis thaliana (see 2 papers)
AT1G79850 RPS17 (RIBOSOMAL PROTEIN S17); structural constituent of ribosome from Arabidopsis thaliana
42% identity, 52% coverage
- function: One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA (By similarity). Required for optimal plastid performance in terms of photosynthesis and growth. Required for the translation of plastid mRNAs. Plays a critical role in biosynthesis of thylakoid membrane proteins encoded by chloroplast genes (PubMed:22900828).
subunit: Part of the 30S ribosomal subunit
disruption phenotype: Reduced plant size and pale green leaves. - Plastid ribosome protein L5 is essential for post-globular embryo development in Arabidopsis thaliana
Dupouy, Plant reproduction 2022 - “...( 2011 ) S16 Essential ATCG00050 Essential Fleischmann et al. ( 2011 ) S17 Non-essential AT1G79850 Non-essential Woo et al. 2002 ; Romani et al. ( 2012 ); Lloyd and Meinke ( 2012 ) S18 Essential ATCG00650 Essential Rogalski et al. ( 2006 ) S19 Essential...”
- Spaceflight induces novel regulatory responses in Arabidopsis seedling as revealed by combined proteomic and transcriptomic analyses
Kruse, BMC plant biology 2020 - “...0.021 AT5G30510 Ribosomal protein S1 1.01 0.002 AT5G54600 50S ribosomal protein L24, chloroplastic 1.01 0.012 AT1G79850 30S ribosomal protein S17, chloroplastic 1.02 0.002 AT5G20180 Ribosomal protein L36 1.03 0.019 AT5G40950 50S ribosomal protein L27, chloroplastic 1.05 0.002 AT2G24090 Ribosomal protein L35 1.06 0.001 AT4G11175 Translation initiation...”
- “...(AT5G54600, L 2 FC RNA =1.01), PSRP3/1 (AT1G68590, L 2 FC RNA =1.13), and RPS17 (AT1G79850, L 2 FC RNA =1.02), translocons TIC55-II (AT2G24820, L 2 FC RNA =1.01), and TIC21 (AT2G15290, L 2 FC RNA =1.03), as well as OUTER ENVELOPE PROTEIN 16 (OEP16) (AT2G28900,...”
- Redox Conformation-Specific Protein-Protein Interactions of the 2-Cysteine Peroxiredoxin in Arabidopsis
Liebthal, Antioxidants (Basel, Switzerland) 2020 - “...C54D (Pseudo-Hyperoxidized) Reduced Oxidized Reduced Oxidized Reduced Oxidized 1 M NaCl 30S ribosomal protein S17 (AT1G79850) HTPA synthase 2 (AT2G45440) 30S ribosomal protein S6 alpha (AT1G64510) MECDP synthase (AT1G63970) Acyl-ACP thioesterase ATL3 (AT1G68260) HTPA synthase 1 (AT3G60880) DAHP synthase 2 (AT4G33510) Elongation factor 1 alpha (AT4G20360)...”
- “...reductase (AT1G20020) 50S ribosomal protein L27 (AT5G40950) Allene oxide synthase (AT5G42650) 50S ribosomal protein L29 (AT1G79850) Protein MET1 (AT1G55480) 50S ribosomal protein L5 (AT4G01310) AT5g64380/MSJ1_22 (AT5G64380) 60S ribosomal protein L26-1 (AT3G49910) Glutathione S-transferase F8 (AT2G47730) ATPase alpha subunit (AtCg00120) Dihydroxy-acid dehydratase (AT3G23940) PLAT domain-containing protein 1...”
- GUN1 and Plastid RNA Metabolism: Learning from Genetics
Tadini, Cells 2020 - “...: pale green cotyledons and leaves; reduced growth albino-seedling lethal A No [ 41 ] At1g79850 PRPS17: plastid ribosomal protein S17 prps17-1 d : pale green cotyledons and leaves; reduced growth albino-seedling lethal A No [ 41 ] Plastid Protein Import At5g16620 Tic40: subunit of the...”
- Separation and Paired Proteome Profiling of Plant Chloroplast and Cytoplasmic Ribosomes
Firmino, Plants (Basel, Switzerland) 2020 - “...NA ATCG01120 plastid 30S uS15c RPS15 + NA AT4G34620 plastid 30S bS16c RPS16 + NA AT1G79850 plastid 30S uS17c RPS17 + NA ATCG00650 plastid 30S bS18c RPS18 + NA ATCG00820 plastid 30S uS19c RPS19 + NA AT3G15190 plastid 30S bS20c RPS20 + NA AT3G27160 plastid 30S...”
- The ArathEULS3 Lectin Ends up in Stress Granules and Can Follow an Unconventional Route for Secretion
Dubiel, International journal of molecular sciences 2020 - “...66.0 At1g74970 30S ribosomal protein S9 RPS9 60.0 At1g78630 50S ribosomal protein L13 RPL13 107.9 At1G79850 30S ribosomal protein S17 RPS17 18.6 At1g07660 Histone H4 At1g07660 77.8 At4g35090 Catalase-2 CAT2 323.3 AtCG00820 30S ribosomal protein S19 rps19 69.7 At1g11860 Aminomethyltransferase, GDCST 39.8 At1G07320 50S ribosomal protein...”
- Systematic Review of Plant Ribosome Heterogeneity and Specialization
Martinez-Seidel, Frontiers in plant science 2020 - “...Dooner, 2004 ), albino at three leaf stage in rice ( Qiu etal., 2018 ). AT1G79850 RPS17 uS17c Reductions in growth, leaf pigments and photosynthesis ( Romani etal., 2012 ), embryo-lethal in maize ( Schultes etal., 2000 ). To reduce ambiguity of interpretation, we avoided to...”
- Integrated Transcriptional and Proteomic Profiling Reveals Potential Amino Acid Transporters Targeted by Nitrogen Limitation Adaptation
Liao, International journal of molecular sciences 2020 - “...protein 2.25 0.002 3.16 0.001 At5g47190 ribosomal protein L19 family protein 2.26 0.003 5.64 0.004 At1g79850 chloroplast 30S ribosomal protein S17 2.36 0.002 5.52 0.001 At4g29060 elongation factor Ts family protein 2.52 0.003 4.68 0.004 At3g15190 chloroplast 30S ribosomal protein S20 2.53 0.002 7.40 0.003 At2g24090...”
- More
- Cell surface and intracellular auxin signalling for H<sup>+</sup> fluxes in root growth
Li, Nature 2021 - “...2.94711492 2 8.340412262 P38666;Q42347 60S ribosomal protein L24-2;60S ribosomal protein L24-1 2.98809878 1.73797235 2 3.851309445 P16180 30S ribosomal protein S17, chloroplastic 2.459372203 0.85221949 2 1.834243789 Q94AH6 Cullin-1 2.273972829 2.46638828 2 6.212296758 F4JZ17;Q39129 Thiosulfate sulfurtransferase 16, chloroplastic 2.201576869 0.96994873 2 2.070539977 Q42431 Oleosin 20.3 kDa 2.001925786 0.87062371...”
- Insights into the function of NADPH thioredoxin reductase C (NTRC) based on identification of NTRC-interacting proteins in vivo
González, Journal of experimental botany 2019 - “...3.12 2 (2) P56801 AtCg00770 RPS8, 30S ribosomal protein S8 C 2 2.72 1 (1) P16180 At1g79850 RPS17, 30S ribosomal protein small subunit protein 17 C 2 7.34 1 (1) P56807 AtCg00650 RPS18, 30S ribosomal protein S18 C 2 4.13 0 Q94K97 At5g24490 Putative 30S ribosomal...”
PMM1549 30S Ribosomal protein S17 from Prochlorococcus marinus sp. MED4
43% identity, 85% coverage
- A Cyanophage MarR-Type Transcription Factor Regulates Host RNase E Expression during Infection
Lambrecht, Microorganisms 2022 - “...(PMM1500) 326,460 34,569 291,891 pdxJ (PMM1107) 237,270 0 237,270 tufA (PMM1508) 387,360 244,715 142,645 rps17 (PMM1549) 160,920 36,521 124,399 rpoA (PMM1535) 97,779 0 97,779 rbcL (PMM0549) 97,015 393 96,622 rpoC1 (PMM1484) 93,962 0 93,962 rpl27 (PMM1345) 119,740 30,858 88,882 PMM0599 88,057 0 88,057 bait protein 2,051,700...”
8p6pP / Q50309 Mycoplasma pneumoniae small ribosomal subunit in chloramphenicol- treated cells (see paper)
45% identity, 92% coverage
8fmwQ / O51440 8fmwQ (see paper)
45% identity, 87% coverage
4v61AQ 4v61AQ (see paper)
42% identity, 88% coverage
LSEI_2494 Ribosomal protein S17 from Lactobacillus casei ATCC 334
40% identity, 97% coverage
P23404 Small ribosomal subunit protein uS17c from Cyanophora paradoxa
41% identity, 80% coverage
B6TG30 Small ribosomal subunit protein uS17c from Zea mays
43% identity, 58% coverage
- Phosphoproteomic analysis of the response of maize leaves to drought, heat and their combination stress.
Hu, Frontiers in plant science 2015 - “...13.40 34 134 55507 1013205 463 2 xxxxxxxxxx SP xxxxxxxxx BF4F976; B4FAA8; B4FAB7; B6SRZ6; B6TDN3; B6TG30; B6TH05; B6UBN4; B7ZYS1; B8A0K2; C0PHB9; C0PLM8; C4J1A8; K7UKJ5; K7V1I2; K7V0H0; K7V4D9; K7WBH2; Q41735; Q8W149; Q9LLI8 11.13 26 100 50073 957698 4.97 3 xxxxxxxx A x S xxxxxxxxxx B4FAU8; B4FKM0; B4FY62;...”
- “...carbon metabolism, and there were eight proteins (group accessions: B6T346, K7TLV1, K7TUM2, K7V1I2, B4FQK5 B6T1H0, B6TG30, K7V792) involved in protein processing. These results indicated that the signaling pathways related to protein processing and to photosynthesis and carbon metabolism played an important role under all three stress...”
LIC12864 30S ribosomal protein S17 from Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130
43% identity, 97% coverage
- Global proteome analysis of Leptospira interrogans
Eshghi, Journal of proteome research 2009 - “...Ribosomal protein L10 LIC10751 0.8341.423 0.4990.635 1.360 0.9111.48 0.5190.787 1.228 1.294 30S Ribosomal protein S17 LIC12864 1.0091.027 0.7130.755 1.339 NS NS NS 1.339 30S Ribosomal protein S1 LIC12447 NS NS NS 0.681.91 0.3620.536 1.355 1.355 50S Ribosomal protein L16 LIC12866 0.8361.246 0.5390.57 1.478 0.9531.12 0.6980.765 1.262...”
P47406 Small ribosomal subunit protein uS17 from Mycoplasma genitalium (strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37)
42% identity, 92% coverage
DIP0482 30S ribosomal protein S17 from Corynebacterium diphtheriae NCTC 13129
42% identity, 93% coverage
- Transcriptome sequencing of the human pathogen Corynebacterium diphtheriae NCTC 13129 provides detailed insights into its transcriptional landscape and into DtxR-mediated transcriptional regulation
Wittchen, BMC genomics 2018 - “...Genes Number of genes Strand TSS Gene names and classification by eggNOG database DIP0472 - DIP0482 11 + detected rpsJ, rplC, rplD, rplW, rplB, rpsS, rplV. rpsC, rplP, rpmC, rpsQ . Translation, ribosomal structure and biogenesis (ribosomal proteins) DIP0203 - DIP0209 8 + not detected DIP0203,...”
Q9ZST1 Small ribosomal subunit protein uS17c from Oryza sativa subsp. japonica
43% identity, 51% coverage
- OsCpn60β1 is Essential for Chloroplast Development in Rice (Oryza sativa L.)
Wu, International journal of molecular sciences 2020 - “...in Proteomics (Mutant/WT) Fold Changes in PRM (Mutant/WT) Q7XDY9 Rubisco accumulation factor 1 0.452 0.473 Q9ZST1 30S ribosomal protein S17 0.234 0.212 Q6Z7V2 24.1 kDa heat shock protein, mitochondrial 15.022 14.833 Q6H4L2 Elongation factor 2 2.907 2.722 Q7F8S5 Peroxiredoxin-2E-2, chloroplastic 0.329 0.313 Q2QQ99 Protein SPIRAL1-like 3...”
- Proteomic response of hybrid wild rice to cold stress at the seedling stage
Wang, PloS one 2018 - “...expressed 2.38 Q6ZL42 Probable histone H2A.2 2.28 Q10L93 50S ribosomal protein L6, putative, expressed 2.28 Q9ZST1 30S ribosomal protein S17, chloroplastic 2.15 Q851P9 Histone-like protein 1.98 P12153 30S ribosomal protein S19, chloroplastic 1.93 A0A0P0WK98 Ribosomal protein L15 (Fragment) 1.73 Q9AV77 60S ribosomal protein L17 1.70 Q7XKE9...”
P17092 Small ribosomal subunit protein uS17c (Fragment) from Pisum sativum
40% identity, 52% coverage
APH_0289 ribosomal protein S17 from Anaplasma phagocytophilum HZ
47% identity, 79% coverage
- Bioinformatic and mass spectrometry identification of Anaplasma phagocytophilum proteins translocated into host cell nuclei
Sinclair, Frontiers in microbiology 2015 - “...2.00 APH_1025 gi|88607605 50S ribosomal protein L7/L12 rplL 1.01 1.85 1.79 1.01 1.82 1.81 1.90 APH_0289 2 gi|88607574 30S ribosomal protein S17 rpsQ 0.90 1.57 1.46 0.95 1.52 1.60 1.70 APH_1034 2 gi|88607212 30S ribosomal protein S7 rpsG 1.16 1.42 1.41 1.08 1.41 1.31 1.50 APH_0196...”
- “...not attempted, including: APH_0160 (putative thymidylate synthase, flavin-dependent, truncation, partial); APH_0196 (nitrogen assimilation regulatory protein); APH_0289 (ribosomal protein S17 [ rpsQ ]); APH_0820 (hypothetical protein); APH_0906 (hypothetical protein); APH_1023 (DNA-directed RNA polymerase, beta subunit [ rpoC ]); APH_1024 (DNA-directed RNA polymerase, beta subunit [ rpoB ]);...”
RB7849 probable 30S ribosomal protein S17 from Pirellula sp. 1
43% identity, 69% coverage
- Transcriptional response of the model planctomycete Rhodopirellula baltica SH1(T) to changing environmental conditions
Wecker, BMC genomics 2009 - “...RB7840 236 30S ribosomal protein S3 10.4 + RB7841 138 Ribosomal protein L16 11.1 + RB7849 108 Ribosomal protein S17 10 + RB7850 122 Ribosomal protein L14b/L23e 11 + RB7852 196 50S ribosomal protein L5 10.4 + RB7854 61 Ribosomal protein S14 11.8 + RB7856 181...”
- “...proteins of the small- and large subunit (RB1233, RB12821, RB12824, RB12839, RB7117, RB7837 - RB7841, RB7849, RB7850, RB7852, RB7854, RB7856, RB7857, RB7859 and RB7899) were repressed. Additionally, a set of genes involved in RNA metabolism, protein synthesis, as well as R. baltica's only translation elongation factor...”
B7FMT1 Small ribosomal subunit protein uS17c from Medicago truncatula
41% identity, 46% coverage
- Proteomic analysis of the response of Funnelifor mismosseae/Medicago sativa to atrazine stress
Sui, BMC plant biology 2018 - “...9.994 0.629 0.006 A0A072URU1 60S ribosomal protein L242 Medicago truncatula MTR_4g104930 7.537 10.287 0.640 0.011 B7FMT1 30S ribosomal protein S17 Medicagotruncatula MTR_2g101770 16.642 9.906 0.740 0.026 G7ILF2 60S ribosomal protein L261 Medicago truncatula MTR_2g012450 16.653 11.151 0.706 0.029 G7K2J3 60S ribosomal proteinL261 Medicago truncatula MTR_5g015570 16.674...”
RS17_THEKO / Q5JDH9 Small ribosomal subunit protein uS17; 30S ribosomal protein S17 from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (Pyrococcus kodakaraensis (strain KOD1)) (see paper)
TK1532 SSU ribosomal protein S17P from Thermococcus kodakaraensis KOD1
45% identity, 68% coverage
- function: One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
subunit: Part of the 30S ribosomal subunit. - Association of a multi-synthetase complex with translating ribosomes in the archaeon Thermococcus kodakarensis
Raina, FEBS letters 2012 - “...TK1500 30S ribosomal protein S9P TK1078 30S ribosomal protein S12P TK1251 30S ribosomal protein S15P TK1532 30S ribosomal protein S17P TK1951 30S ribosomal protein S6e TK0187 glutamine amidotransferase, class I TK1239 peptide chain release factor 1 TK1671 tRNA-modifying enzyme TK0981 N2, N2-dimethylguanosine tRNA methyltransferase TK0970 N(2),N(2)-dimethylguanosine...”
6skfAs / Q5JDH9 6skfAs (see paper)
45% identity, 71% coverage
- Ligands: rna; zinc ion (6skfAs)
6tmfS / A0A218NZX3 Structure of an archaeal abce1-bound ribosomal post-splitting complex (see paper)
43% identity, 70% coverage
MHJ_0181 30S ribosomal protein S17 from Mycoplasma hyopneumoniae J
42% identity, 88% coverage
- N-terminomics identifies widespread endoproteolysis and novel methionine excision in a genome-reduced bacterial pathogen
Berry, Scientific reports 2017 - “...factor GreA (M)KNIVDDKILLTQQKLEEIEKELEHLINVER MHJ_0189 50S ribosomal protein L4 (M)NKISEISIQSQKTENLVKFNANDDL PKSLFEQKEPHFQAIFDSILSER MHJ_0029 DNA topoisomerase (ATP-hydrolyzing) (M)NKSLDSVINSQLEKILAEKFIR MHJ_0181 30S ribosomal protein S17 (M)NNLTLEKKAQTR MHJ_0650 30S ribosomal protein S9 (M)NQPELSYYGTGR MHJ_0125 Putative aminopeptidase (M)SILEKMKKYCDIDGMSR MHJ_0080 Purine-nucleoside phosphorylase (M)TAHIEAKKNEIAPIVLMPGDPLR MHJ_0506 Phosphate acetyltransferase (M)TYQEYLQAR MHJ_0110 Adenine phosphoribosyltransferase (M)QINLEKYIR MHJ_0611 Phosphocarrier protein...”
- “...peptides from 7 proteins shown in Supplementary Data S5 . For 30S ribosomal protein S17 (MHJ_0181) and LicA (MHJ_0036) we observed N-terminal peptides with both the methionine present and removed at positions 1, 2, 4 and 5; and 1, 30 and 31 respectively suggesting that these...”
RS17_PYRFU / Q8U008 Small ribosomal subunit protein uS17; 30S ribosomal protein S17 from Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) (see paper)
5jb3R / Q8U008 Cryo-em structure of a full archaeal ribosomal translation initiation complex in the p-remote conformation (see paper)
44% identity, 68% coverage
- function: One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
subunit: Part of the 30S ribosomal subunit. - Ligand: rna (5jb3R)
RR17_SPIOL / P82137 Small ribosomal subunit protein uS17c; 30S ribosomal protein S17, chloroplastic from Spinacia oleracea (Spinach) (see 2 papers)
41% identity, 42% coverage
- function: Component of the chloroplast ribosome (chloro-ribosome), a dedicated translation machinery responsible for the synthesis of chloroplast genome-encoded proteins, including proteins of the transcription and translation machinery and components of the photosynthetic apparatus.
subunit: Component of the chloroplast small ribosomal subunit (SSU). Mature 70S chloroplast ribosomes of higher plants consist of a small (30S) and a large (50S) subunit. The 30S small subunit contains 1 molecule of ribosomal RNA (16S rRNA) and 24 different proteins. The 50S large subunit contains 3 rRNA molecules (23S, 5S and 4.5S rRNA) and 33 different proteins.
5mmjq / P82137 Structure of the small subunit of the chloroplast ribosome (see paper)
41% identity, 79% coverage
rrnAC1603 ribosomal protein S17p from Haloarcula marismortui ATCC 43049
40% identity, 66% coverage
TGME49_273060 ribosomal protein S17, putative from Toxoplasma gondii ME49
35% identity, 64% coverage
9fiaBL / A0A125YU95 9fiaBL (see paper)
33% identity, 72% coverage
For advice on how to use these tools together, see
Interactive tools for functional annotation of bacterial genomes.
The PaperBLAST database links 793,807 different protein sequences to 1,259,118 scientific articles. Searches against EuropePMC were last performed on March 13 2025.
PaperBLAST builds a database of protein sequences that are linked
to scientific articles. These links come from automated text searches
against the articles in EuropePMC
and from manually-curated information from GeneRIF, UniProtKB/Swiss-Prot,
BRENDA,
CAZy (as made available by dbCAN),
BioLiP,
CharProtDB,
MetaCyc,
EcoCyc,
TCDB,
REBASE,
the Fitness Browser,
and a subset of the European Nucleotide Archive with the /experiment tag.
Given this database and a protein sequence query,
PaperBLAST uses protein-protein BLAST
to find similar sequences with E < 0.001.
To build the database, we query EuropePMC with locus tags, with RefSeq protein
identifiers, and with UniProt
accessions. We obtain the locus tags from RefSeq or from MicrobesOnline. We use
queries of the form "locus_tag AND genus_name" to try to ensure that
the paper is actually discussing that gene. Because EuropePMC indexes
most recent biomedical papers, even if they are not open access, some
of the links may be to papers that you cannot read or that our
computers cannot read. We query each of these identifiers that
appears in the open access part of EuropePMC, as well as every locus
tag that appears in the 500 most-referenced genomes, so that a gene
may appear in the PaperBLAST results even though none of the papers
that mention it are open access. We also incorporate text-mined links
from EuropePMC that link open access articles to UniProt or RefSeq
identifiers. (This yields some additional links because EuropePMC
uses different heuristics for their text mining than we do.)
For every article that mentions a locus tag, a RefSeq protein
identifier, or a UniProt accession, we try to select one or two
snippets of text that refer to the protein. If we cannot get access to
the full text, we try to select a snippet from the abstract, but
unfortunately, unique identifiers such as locus tags are rarely
provided in abstracts.
PaperBLAST also incorporates manually-curated protein functions:
- Proteins from NCBI's RefSeq are included if a
GeneRIF
entry links the gene to an article in
PubMed®.
GeneRIF also provides a short summary of the article's claim about the
protein, which is shown instead of a snippet.
- Proteins from Swiss-Prot (the curated part of UniProt)
are included if the curators
identified experimental evidence for the protein's function (evidence
code ECO:0000269). For these proteins, the fields of the Swiss-Prot entry that
describe the protein's function are shown (with bold headings).
- Proteins from BRENDA,
a curated database of enzymes, are included if they are linked to a paper in PubMed
and their full sequence is known.
- Every protein from the non-redundant subset of
BioLiP,
a database
of ligand-binding sites and catalytic residues in protein structures, is included. Since BioLiP itself
does not include descriptions of the proteins, those are taken from the
Protein Data Bank.
Descriptions from PDB rely on the original submitter of the
structure and cannot be updated by others, so they may be less reliable.
(For SitesBLAST and Sites on a Tree, we use a larger subset of BioLiP so that every
ligand is represented among a group of structures with similar sequences, but for
PaperBLAST, we use the non-redundant set provided by BioLiP.)
- Every protein from EcoCyc, a curated
database of the proteins in Escherichia coli K-12, is included, regardless
of whether they are characterized or not.
- Proteins from the MetaCyc metabolic pathway database
are included if they are linked to a paper in PubMed and their full sequence is known.
- Proteins from the Transport Classification Database (TCDB)
are included if they have known substrate(s), have reference(s),
and are not described as uncharacterized or putative.
(Some of the references are not visible on the PaperBLAST web site.)
- Every protein from CharProtDB,
a database of experimentally characterized protein annotations, is included.
- Proteins from the CAZy database of carbohydrate-active enzymes
are included if they are associated with an Enzyme Classification number.
Even though CAZy does not provide links from individual protein sequences to papers,
these should all be experimentally-characterized proteins.
- Proteins from the REBASE database
of restriction enzymes are included if they have known specificity.
- Every protein with an evidence-based reannotation (based on mutant phenotypes)
in the Fitness Browser is included.
- Sequence-specific transcription factors (including sigma factors and DNA-binding response regulators)
with experimentally-determined DNA binding sites from the
PRODORIC database of gene regulation in prokaryotes.
- Putative transcription factors from RegPrecise
that have manually-curated predictions for their binding sites. These predictions are based on
conserved putative regulatory sites across genomes that contain similar transcription factors,
so PaperBLAST clusters the TFs at 70% identity and retains just one member of each cluster.
- Coding sequence (CDS) features from the
European Nucleotide Archive (ENA)
are included if the /experiment tag is set (implying that there is experimental evidence for the annotation),
the nucleotide entry links to paper(s) in PubMed,
and the nucleotide entry is from the STD data class
(implying that these are targeted annotated sequences, not from shotgun sequencing).
Also, to filter out genes whose transcription or translation was detected, but whose function
was not studied, nucleotide entries or papers with more than 25 such proteins are excluded.
Descriptions from ENA rely on the original submitter of the
sequence and cannot be updated by others, so they may be less reliable.
Except for GeneRIF and ENA,
the curated entries include a short curated
description of the protein's function.
For entries from BioLiP, the protein's function may not be known beyond binding to the ligand.
Many of these entries also link to articles in PubMed.
For more information see the
PaperBLAST paper (mSystems 2017)
or the code.
You can download PaperBLAST's database here.
Changes to PaperBLAST since the paper was written:
- November 2023: incorporated PRODORIC and RegPrecise. Many PRODORIC entries were not linked to a protein sequence (no UniProt identifier), so we added this information.
- February 2023: BioLiP changed their download format. PaperBLAST now includes their non-redundant subset. SitesBLAST and Sites on a Tree use a larger non-redundant subset that ensures that every ligand is represented within each cluster. This should ensure that every binding site is represented.
- June 2022: incorporated some coding sequences from ENA with the /experiment tag.
- March 2022: incorporated BioLiP.
- April 2020: incorporated TCDB.
- April 2019: EuropePMC now returns table entries in their search results. This has expanded PaperBLAST's database, but most of the new entries are of low relevance, and the resulting snippets are often just lists of locus tags with annotations.
- February 2018: the alignment page reports the conservation of the hit's functional sites (if available from from Swiss-Prot or UniProt)
- January 2018: incorporated BRENDA.
- December 2017: incorporated MetaCyc, CharProtDB, CAZy, REBASE, and the reannotations from the Fitness Browser.
- September 2017: EuropePMC no longer returns some table entries in their search results. This has shrunk PaperBLAST's database, but has also reduced the number of low-relevance hits.
Many of these changes are described in Interactive tools for functional annotation of bacterial genomes.
PaperBLAST cannot provide snippets for many of the papers that are
published in non-open-access journals. This limitation applies even if
the paper is marked as "free" on the publisher's web site and is
available in PubmedCentral or EuropePMC. If a journal that you publish
in is marked as "secret," please consider publishing elsewhere.
Many important articles are missing from PaperBLAST, either because
the article's full text is not in EuropePMC (as for many older
articles), or because the paper does not mention a protein identifier such as a locus tag, or because of PaperBLAST's heuristics. If you notice an
article that characterizes a protein's function but is missing from
PaperBLAST, please notify the curators at UniProt
or add an entry to GeneRIF.
Entries in either of these databases will eventually be incorporated
into PaperBLAST. Note that to add an entry to UniProt, you will need
to find the UniProt identifier for the protein. If the protein is not
already in UniProt, you can ask them to create an entry. To add an
entry to GeneRIF, you will need an NCBI Gene identifier, but
unfortunately many prokaryotic proteins in RefSeq do not have
corresponding Gene identifers.
References
PaperBLAST: Text-mining papers for information about homologs.
M. N. Price and A. P. Arkin (2017). mSystems, 10.1128/mSystems.00039-17.
Europe PMC in 2017.
M. Levchenko et al (2017). Nucleic Acids Research, 10.1093/nar/gkx1005.
Gene indexing: characterization and analysis of NLM's GeneRIFs.
J. A. Mitchell et al (2003). AMIA Annu Symp Proc 2003:460-464.
UniProt: the universal protein knowledgebase.
The UniProt Consortium (2016). Nucleic Acids Research, 10.1093/nar/gkw1099.
BRENDA in 2017: new perspectives and new tools in BRENDA.
S. Placzek et al (2017). Nucleic Acids Research, 10.1093/nar/gkw952.
The EcoCyc database: reflecting new knowledge about Escherichia coli K-12.
I. M. Keeseler et al (2016). Nucleic Acids Research, 10.1093/nar/gkw1003.
The MetaCyc database of metabolic pathways and enzymes.
R. Caspi et al (2018). Nucleic Acids Research, 10.1093/nar/gkx935.
CharProtDB: a database of experimentally characterized protein annotations.
R. Madupu et al (2012). Nucleic Acids Research, 10.1093/nar/gkr1133.
The carbohydrate-active enzymes database (CAZy) in 2013.
V. Lombard et al (2014). Nucleic Acids Research, 10.1093/nar/gkt1178.
The Transporter Classification Database (TCDB): recent advances
M. H. Saier, Jr. et al (2016). Nucleic Acids Research, 10.1093/nar/gkv1103.
REBASE - a database for DNA restriction and modification: enzymes, genes and genomes.
R. J. Roberts et al (2015). Nucleic Acids Research, 10.1093/nar/gku1046.
Deep annotation of protein function across diverse bacteria from mutant phenotypes.
M. N. Price et al (2016). bioRxiv, 10.1101/072470.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory