Alignments for a candidate for ilvE in Cereibacter sphaeroides ATCC 17029

Align branched-chain-amino-acid aminotransferase subunit (EC 2.6.1.42) (characterized)
to candidate WP_002721560.1 RSPH17029_RS14130 branched-chain amino acid aminotransferase

Query= metacyc::MONOMER-11914
         (306 letters)



>NCBI__GCF_000015985.1:WP_002721560.1
          Length = 288

 Score =  229 bits (584), Expect = 6e-65
 Identities = 122/294 (41%), Positives = 181/294 (61%), Gaps = 14/294 (4%)

Query: 4   EASGKIWLNGEMVEWEEATVHVLSHVVHYGSSVFEGIRCYRNSKGSAIFRLREHVKRLFD 63
           +  GKIW++G++VEW EA VH+L+H +HY SSVFEG RCY       IF+  EH +RL  
Sbjct: 6   DRDGKIWMDGKLVEWREAKVHILTHALHYASSVFEGERCYNGK----IFKSVEHSERLRR 61

Query: 64  SAKIYRMDIPYTQEQICDAIVETVRENGLEECYIRPVVFRGYGE-MGVHPVNCPVDVAVA 122
           S ++  M +PYT E+I  A   T+  NGL + Y+R + +RG GE MGV     P+ VAVA
Sbjct: 62  SGELLDMPLPYTVEEIEAAKKATLEANGLTDAYVRALAWRGAGEDMGVASSRNPIRVAVA 121

Query: 123 AWEWGAYLGAEALEVGVDAGVSTWRRMAPNTMPNMAKAGGNYLNSQLAKMEAVRHGYDEA 182
            W WG Y G +A   G    +S W+R +P T+P+ AKA G Y+   ++K  A   G  +A
Sbjct: 122 VWSWGNYYG-DAKFKGAKLDISKWKRPSPETIPSAAKASGLYMICTMSKHAAEAKGCSDA 180

Query: 183 IMLDYHGYISEGSGENIFLVSEGEIYTPPVSSSLLRGITRDSVIKIARTEGVTVHEEPIT 242
           +M DY GY++E +G NIF V +GE++T P+  ++L GITR +VI + R +G+ VHE  I 
Sbjct: 181 MMFDYRGYVAEATGANIFFVKDGEVHT-PLPDAILNGITRQTVIGMLRDKGIKVHERYIE 239

Query: 243 REMLYIADEAFFTGTAAEITPIRSVD--GIEIGAGRRGPVTKLLQDEFFRIIRA 294
              L   ++ + TGTAAE+TP+  +     E+GA     +T+ +  ++ +++RA
Sbjct: 240 ASELEGFEQCWLTGTAAEVTPVGRIGDYSFEVGA-----LTREIATDYEKLVRA 288


Lambda     K      H
   0.320    0.136    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 287
Number of extensions: 20
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 288
Length adjustment: 26
Effective length of query: 280
Effective length of database: 262
Effective search space:    73360
Effective search space used:    73360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)

Align candidate WP_002721560.1 RSPH17029_RS14130 (branched-chain amino acid aminotransferase)
to HMM TIGR01122 (ilvE: branched-chain amino acid aminotransferase (EC 2.6.1.42))

Software error:

../bin/blast/fastacmd -i /tmp/list.13913.in -d ../tmp/NCBI__GCF_000015985.1/orgs.faa -p T > /tmp/gapView.13913.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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