Potential Gaps in Amino acid biosynthesis

Found 201 low-confidence and 434 medium-confidence steps on the best paths for 18 pathways x 150 genomes. 48 of 635 gaps have been classified. 134 of 201 low-confidence steps are known gaps in this or related organisms.

Pathway	Step	Organism	Best candidate	2nd candidate	Class of gap	Known?
arg	argA: N-acylglutamate synthase	Steroidobacter denitrificans DSM 18526	ACG33_RS14135	ACG33_RS14155
arg	argC: N-acylglutamylphosphate reductase	Ferroglobus placidus DSM 10642	FERP_RS04630
arg	argC: N-acylglutamylphosphate reductase	Methanococcus aeolicus Nankai-3	MAEO_RS06695
arg	argC: N-acylglutamylphosphate reductase	Methanococcus maripaludis C5	MMARC5_RS07930	MMARC5_RS00960
arg	argC: N-acylglutamylphosphate reductase	Methanosarcina barkeri Fusaro	MBAR_RS10630
arg	argC: N-acylglutamylphosphate reductase	Methanothermobacter thermautotrophicus Delta H	MTH_RS03985
arg	argC: N-acylglutamylphosphate reductase	Nocardiopsis lucentensis DSM 44048			spurious	known gap
arg	argD: N-acetylornithine aminotransferase	Arcobacter nitrofigilis DSM 7299	ARNIT_RS13880	ARNIT_RS07040
arg	argD: N-acetylornithine aminotransferase	Chlorobium phaeobacteroides BS1	CPHAMN1_RS03190	CPHAMN1_RS01040
arg	argD: N-acetylornithine aminotransferase	Methanosarcina acetivorans C2A	MA_RS00620	MA_RS15010
arg	argD: N-acetylornithine aminotransferase	Methanosarcina barkeri Fusaro	MBAR_RS04695	MBAR_RS17405
arg	argD: N-acetylornithine aminotransferase	Methanosarcina mazei Go1	MM_RS07280	MM_RS00255
arg	argD: N-acetylornithine aminotransferase	Prosthecochloris aestuarii DSM 271	PAES_RS02955	PAES_RS00970
arg	argD: N-acetylornithine aminotransferase	Steroidobacter denitrificans DSM 18526	ACG33_RS14145	ACG33_RS02865
arg	argD: N-acetylornithine aminotransferase	Sulfurimonas denitrificans DSM 1251	SUDEN_RS06570	SUDEN_RS06750
arg	argE: N-acetylornithine deacetylase	Steroidobacter denitrificans DSM 18526				known gap
arg	argF': acetylornithine transcarbamoylase	Steroidobacter denitrificans DSM 18526	ACG33_RS14150
arg	argH: argininosuccinate lyase	Beijerinckia indica ATCC 9039			spurious	known gap
arg	argH: argininosuccinate lyase	Pyrolobus fumarii 1A	PYRFU_RS03710	PYRFU_RS04310
arg	argJ: ornithine acetyltransferase	Thermocrinis albus DSM 14484	THAL_RS04200
arg	carB: carbamoyl phosphate synthase subunit beta	Methanothermobacter thermautotrophicus Delta H			spurious	known gap
arg	lysK: [LysW]-ornithine hydrolase	Pyrolobus fumarii 1A	PYRFU_RS08530
asn	asnB: asparagine synthase (glutamine-hydrolysing)	Methanothermobacter thermautotrophicus Delta H	MTH_RS01915
asn	asnB: asparagine synthase (glutamine-hydrolysing)	Nitriliruptor alkaliphilus DSM 45188	NITAL_RS20840
asn	aspS2: aspartyl-tRNA(Asp/Asn) synthetase	Acidimicrobium ferrooxidans DSM 10331	AFER_RS02725
asn	aspS2: aspartyl-tRNA(Asp/Asn) synthetase	Frankia alni ACN14A	FRAAL_RS05245
asn	aspS2: aspartyl-tRNA(Asp/Asn) synthetase	Pyrolobus fumarii 1A	PYRFU_RS03160
asn	aspS2: aspartyl-tRNA(Asp/Asn) synthetase	Thermomonospora curvata DSM 43183	TCUR_RS10525	TCUR_RS10510
asn	gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A	Nocardiopsis lucentensis DSM 44048	D471_RS0108075	D471_RS0112580
asn	gatC: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C	Methanococcus aeolicus Nankai-3	MAEO_RS04560
chorismate	aroA: 3-phosphoshikimate 1-carboxyvinyltransferase	Hydrogenovibrio halophilus DSM 15072
chorismate	aroA: 3-phosphoshikimate 1-carboxyvinyltransferase	Paraburkholderia sp. CCGE1002
chorismate	aroA: 3-phosphoshikimate 1-carboxyvinyltransferase	Pyrolobus fumarii 1A	PYRFU_RS00635
chorismate	aroA': 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase	Desulfotalea psychrophila LSv54	DP_RS12420		spurious	known gap
chorismate	aroB: 3-dehydroquinate synthase	Acidimicrobium ferrooxidans DSM 10331	AFER_RS08885
chorismate	aroB: 3-dehydroquinate synthase	Pyrolobus fumarii 1A	PYRFU_RS07225
chorismate	aroB': dehydroquinate synthase II	Desulfotalea psychrophila LSv54			spurious	known gap
chorismate	aroC: chorismate synthase	Chlorobaculum parvum NCIB 8327			spurious	known gap
chorismate	aroC: chorismate synthase	Thioalkalivibrio halophilus HL17			spurious	known gap
chorismate	aroD: 3-dehydroquinate dehydratase	Desulfatiglans anilini DSM 4660	H567_RS26800	H567_RS0100640
chorismate	aroD: 3-dehydroquinate dehydratase	Frankia alni ACN14A	FRAAL_RS03895
chorismate	aroD: 3-dehydroquinate dehydratase	Haloglycomyces albus DSM 45210			spurious	known gap
chorismate	aroD: 3-dehydroquinate dehydratase	Heliobacterium modesticaldum Ice1; ATCC 51547	HM1_RS02480
chorismate	aroD: 3-dehydroquinate dehydratase	Pyrolobus fumarii 1A	PYRFU_RS04235
chorismate	aroE: shikimate dehydrogenase	Nitriliruptor alkaliphilus DSM 45188	NITAL_RS16585
chorismate	aroE: shikimate dehydrogenase	Pelobacter propionicus DSM 2379	PPRO_RS11690
chorismate	aroE: shikimate dehydrogenase	Prosthecochloris aestuarii DSM 271	PAES_RS08265
chorismate	aroL: shikimate kinase	Acidimicrobium ferrooxidans DSM 10331	AFER_RS01155
chorismate	aroL: shikimate kinase	Arcobacter nitrofigilis DSM 7299	ARNIT_RS03210
chorismate	aroL: shikimate kinase	Bacillus alkalinitrilicus DSM 22532	BK574_RS11810
chorismate	aroL: shikimate kinase	Calditerrivibrio nitroreducens DSM 19672	CALNI_RS01115
chorismate	aroL: shikimate kinase	Caminibacter mediatlanticus TB-2	CMTB2_RS02520
chorismate	aroL: shikimate kinase	Chlorobaculum parvum NCIB 8327	CPAR_RS03890
chorismate	aroL: shikimate kinase	Chlorobium limicola DSM 245	CLIM_RS04760
chorismate	aroL: shikimate kinase	Chlorobium phaeobacteroides BS1	CPHAMN1_RS04755
chorismate	aroL: shikimate kinase	Clostridium acetobutylicum ATCC 824	CA_C0898
chorismate	aroL: shikimate kinase	Clostridium kluyveri DSM 555	CKL_RS03880
chorismate	aroL: shikimate kinase	Dehalococcoides mccartyi 195	DET_RS02515
chorismate	aroL: shikimate kinase	Desulfarculus baarsii DSM 2075	DEBA_RS16080	DEBA_RS09240
chorismate	aroL: shikimate kinase	Desulfatiglans anilini DSM 4660	H567_RS22310	H567_RS0114935
chorismate	aroL: shikimate kinase	Desulfobulbus mediterraneus DSM 13871	G494_RS0104115	G494_RS0102320
chorismate	aroL: shikimate kinase	Desulfotomaculum ruminis DSM 2154	DESRU_RS15745
chorismate	aroL: shikimate kinase	Desulfuromonas acetexigens	BQ4888_RS02755	BQ4888_RS16740
chorismate	aroL: shikimate kinase	Desulfuromusa kysingii DSM 7343	BLU87_RS06245	BLU87_RS02125
chorismate	aroL: shikimate kinase	Geobacter lovleyi SZ	GLOV_RS07865	GLOV_RS15295
chorismate	aroL: shikimate kinase	Leptospirillum ferrooxidans C2-3	LFE_RS07665
chorismate	aroL: shikimate kinase	Malonomonas rubra DSM 5091	BUB13_RS16435	BUB13_RS10355
chorismate	aroL: shikimate kinase	Nitratifractor salsuginis DSM 16511	NITSA_RS09825
chorismate	aroL: shikimate kinase	Nitratiruptor tergarcus DSM 16512	B8779_RS08595
chorismate	aroL: shikimate kinase	Prosthecochloris aestuarii DSM 271	PAES_RS07580
chorismate	aroL: shikimate kinase	Sulfuricurvum kujiense DSM 16994	SULKU_RS03215
chorismate	aroL: shikimate kinase	Sulfurimonas denitrificans DSM 1251	SUDEN_RS02585
chorismate	aroL: shikimate kinase	Thermocrinis albus DSM 14484	THAL_RS02745
chorismate	aroL: shikimate kinase	Thermovibrio ammonificans HB-1	THEAM_RS06475
chorismate	fbp: 6-deoxy-5-ketofructose 1-phosphate synthase	Archaeoglobus veneficus SNP6	ARCVE_RS04465	ARCVE_RS05825
chorismate	fbp: 6-deoxy-5-ketofructose 1-phosphate synthase	Desulfatiglans anilini DSM 4660	H567_RS22300	H567_RS0100630		known gap
chorismate	fbp: 6-deoxy-5-ketofructose 1-phosphate synthase	Desulfovibrio gracilis DSM 16080	B5D49_RS08675	B5D49_RS01240	spurious	known gap
chorismate	fbp: 6-deoxy-5-ketofructose 1-phosphate synthase	Desulfovibrio oxyclinae DSM 11498	B149_RS0107855	B149_RS0103015		known gap
chorismate	fbp: 6-deoxy-5-ketofructose 1-phosphate synthase	Desulfurobacterium atlanticum DSM 15668	CHB58_RS03905			known gap
chorismate	fbp: 6-deoxy-5-ketofructose 1-phosphate synthase	Ferroglobus placidus DSM 10642	FERP_RS07635	FERP_RS02995
chorismate	fbp: 6-deoxy-5-ketofructose 1-phosphate synthase	Methanobacterium lacus AL-21	METBO_RS02970	METBO_RS06790
chorismate	fbp: 6-deoxy-5-ketofructose 1-phosphate synthase	Methanothermobacter thermautotrophicus Delta H	MTH_RS08075	MTH_RS02685
chorismate	fbp: 6-deoxy-5-ketofructose 1-phosphate synthase	Persephonella marina EX-H1	PERMA_RS08670			known gap
chorismate	fbp: 6-deoxy-5-ketofructose 1-phosphate synthase	Sulfurihydrogenibium azorense Az-Fu1	SULAZ_RS03065			known gap
chorismate	fbp: 6-deoxy-5-ketofructose 1-phosphate synthase	Sulfurihydrogenibium subterraneum DSM 15120	Q385_RS0101975			known gap
chorismate	fbp: 6-deoxy-5-ketofructose 1-phosphate synthase	Thermocrinis albus DSM 14484	THAL_RS07745	THAL_RS02685
chorismate	fbp: 6-deoxy-5-ketofructose 1-phosphate synthase	Thermovibrio ammonificans HB-1	THEAM_RS02275			known gap
cys	cysE: serine acetyltransferase	Desulfovibrio gracilis DSM 16080	B5D49_RS00835		spurious	known gap
cys	cysK: O-acetylserine or O-succinylserine sulfhydrylase	Caminibacter mediatlanticus TB-2	CMTB2_RS00355	CMTB2_RS05595
cys	serC: 3-phosphoserine aminotransferase	Desulfobacca acetoxidans DSM 11109	DESAC_RS06350
cys	serC: 3-phosphoserine aminotransferase	Persephonella marina EX-H1	PERMA_RS01695
cys	serC: 3-phosphoserine aminotransferase	Pyrolobus fumarii 1A	PYRFU_RS03405
cys	serC: 3-phosphoserine aminotransferase	Sulfurihydrogenibium azorense Az-Fu1	SULAZ_RS02850		spurious	known gap
cys	serC: 3-phosphoserine aminotransferase	Sulfurihydrogenibium subterraneum DSM 15120	Q385_RS0102205		spurious	known gap
cys	serC: 3-phosphoserine aminotransferase	Thermocrinis albus DSM 14484	THAL_RS04470			known gap
gln	glnA: glutamine synthetase	Clostridium kluyveri DSM 555	CKL_RS00630
gln	glnA: glutamine synthetase	Dehalococcoides mccartyi 195	DET_RS05810
gln	glnA: glutamine synthetase	Desulfarculus baarsii DSM 2075	DEBA_RS05720
gln	glnA: glutamine synthetase	Desulfatiglans anilini DSM 4660	H567_RS0111570
gln	glnA: glutamine synthetase	Desulfobacca acetoxidans DSM 11109	DESAC_RS05150
gln	glnA: glutamine synthetase	Desulfovibrio gracilis DSM 16080	B5D49_RS13465
gln	glnA: glutamine synthetase	Desulfovibrio oxyclinae DSM 11498	B149_RS0106590
gln	gltX: glutamyl-tRNA(Glx) synthetase	Clostridium kluyveri DSM 555	CKL_RS07170
gln	gltX: glutamyl-tRNA(Glx) synthetase	Dehalococcoides mccartyi 195	DET_RS07000
gln	gltX: glutamyl-tRNA(Glx) synthetase	Desulfarculus baarsii DSM 2075	DEBA_RS00500
gln	gltX: glutamyl-tRNA(Glx) synthetase	Desulfatiglans anilini DSM 4660	H567_RS0110855
gln	gltX: glutamyl-tRNA(Glx) synthetase	Desulfobacca acetoxidans DSM 11109	DESAC_RS08375
gln	gltX: glutamyl-tRNA(Glx) synthetase	Desulfovibrio gracilis DSM 16080	B5D49_RS01925
gln	gltX: glutamyl-tRNA(Glx) synthetase	Desulfovibrio oxyclinae DSM 11498	B149_RS0103595
his	hisA: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase	Acidimicrobium ferrooxidans DSM 10331	AFER_RS05670	AFER_RS05665
his	hisA: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase	Pyrolobus fumarii 1A	PYRFU_RS07130	PYRFU_RS07125
his	hisA: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase	Thiomicrospira pelophila DSM 1534			spurious	known gap
his	hisB: imidazoleglycerol-phosphate dehydratase	Steroidobacter denitrificans DSM 18526
his	hisC: histidinol-phosphate aminotransferase	Frankia alni ACN14A	FRAAL_RS21810
his	hisC: histidinol-phosphate aminotransferase	Nitriliruptor alkaliphilus DSM 45188	NITAL_RS18760	NITAL_RS15945
his	hisC: histidinol-phosphate aminotransferase	Teredinibacter turnerae T7901	TERTU_RS04235	TERTU_RS05030
his	hisD: histidinal/histidinol dehydrogenase	Nocardiopsis lucentensis DSM 44048	D471_RS0119690
his	hisF: imidazole glycerol phosphate synthase, cyclase subunit	Thiomicrospira pelophila DSM 1534			spurious	known gap
his	hisG: ATP phosphoribosyltransferase	Methylobacterium nodulans ORS 2060			spurious	known gap
his	hisH: imidazole glycerol phosphate synthase, amidotransferase subunit	Thiomicrospira pelophila DSM 1534			spurious	known gap
his	hisI: phosphoribosyl-ATP pyrophosphatase	Acidimicrobium ferrooxidans DSM 10331	AFER_RS05690	AFER_RS08245		known gap
his	hisI: phosphoribosyl-ATP pyrophosphatase	Chlorobaculum parvum NCIB 8327	CPAR_RS07305	CPAR_RS09930		known gap
his	hisI: phosphoribosyl-ATP pyrophosphatase	Chlorobaculum tepidum TLS	CT0546	CT2086		known gap
his	hisI: phosphoribosyl-ATP pyrophosphatase	Chlorobium limicola DSM 245	CLIM_RS02615	CLIM_RS11925		known gap
his	hisI: phosphoribosyl-ATP pyrophosphatase	Chlorobium phaeobacteroides BS1	CPHAMN1_RS09080	CPHAMN1_RS01245		known gap (100% id.)
his	hisI: phosphoribosyl-ATP pyrophosphatase	Dehalococcoides mccartyi 195	DET_RS04400	DET_RS08360		known gap
his	hisI: phosphoribosyl-ATP pyrophosphatase	Desulfacinum hydrothermale DSM 13146	B9A12_RS03080	B9A12_RS02075		known gap
his	hisI: phosphoribosyl-ATP pyrophosphatase	Desulfacinum infernum DSM 9756	BUB04_RS00565	BUB04_RS02805
his	hisI: phosphoribosyl-ATP pyrophosphatase	Desulfallas geothermicus DSM 3669	BM299_RS02155	BM299_RS07660		known gap
his	hisI: phosphoribosyl-ATP pyrophosphatase	Desulfarculus baarsii DSM 2075	DEBA_RS04780	DEBA_RS06115
his	hisI: phosphoribosyl-ATP pyrophosphatase	Desulfatibacillum aliphaticivorans DSM 15576	G491_RS0107675	G491_RS32330		known gap
his	hisI: phosphoribosyl-ATP pyrophosphatase	Desulfatiglans anilini DSM 4660	H567_RS0118835	H567_RS0115195		known gap
his	hisI: phosphoribosyl-ATP pyrophosphatase	Desulfobacca acetoxidans DSM 11109	DESAC_RS07050	DESAC_RS13025		known gap
his	hisI: phosphoribosyl-ATP pyrophosphatase	Desulfobacter vibrioformis DSM 8776	Q366_RS09325	Q366_RS10585		known gap
his	hisI: phosphoribosyl-ATP pyrophosphatase	Desulfobulbus mediterraneus DSM 13871	G494_RS0117715	G494_RS0110315		known gap
his	hisI: phosphoribosyl-ATP pyrophosphatase	Desulfotalea psychrophila LSv54	DP_RS06475	DP_RS13395		known gap
his	hisI: phosphoribosyl-ATP pyrophosphatase	Prosthecochloris aestuarii DSM 271	PAES_RS03450	PAES_RS01075		known gap
his	hisI: phosphoribosyl-ATP pyrophosphatase	Thermodesulforhabdus norvegica DSM 9990	BM091_RS02930	BM091_RS07235
his	hisI: phosphoribosyl-ATP pyrophosphatase	Thermomonospora curvata DSM 43183	TCUR_RS14290	TCUR_RS05050		known gap
his	hisN: histidinol-phosphate phosphatase	Acidimicrobium ferrooxidans DSM 10331	AFER_RS01810	AFER_RS05680
his	hisN: histidinol-phosphate phosphatase	Archaeoglobus veneficus SNP6	ARCVE_RS08880			known gap
his	hisN: histidinol-phosphate phosphatase	Arcobacter nitrofigilis DSM 7299	ARNIT_RS13180	ARNIT_RS09735
his	hisN: histidinol-phosphate phosphatase	Calditerrivibrio nitroreducens DSM 19672	CALNI_RS09825			known gap
his	hisN: histidinol-phosphate phosphatase	Chlorobaculum parvum NCIB 8327	CPAR_RS03600	CPAR_RS02705		known gap
his	hisN: histidinol-phosphate phosphatase	Clostridium acetobutylicum ATCC 824	CA_C2727	CA_C0938
his	hisN: histidinol-phosphate phosphatase	Clostridium kluyveri DSM 555	CKL_RS01320	CKL_RS06425
his	hisN: histidinol-phosphate phosphatase	Dehalococcoides mccartyi 195	DET_RS04390	DET_RS01145		known gap
his	hisN: histidinol-phosphate phosphatase	Denitrovibrio acetiphilus DSM 12809	DACET_RS14105	DACET_RS05830		known gap
his	hisN: histidinol-phosphate phosphatase	Desulfacinum hydrothermale DSM 13146	B9A12_RS00860	B9A12_RS00755
his	hisN: histidinol-phosphate phosphatase	Desulfacinum infernum DSM 9756	BUB04_RS09485	BUB04_RS14065
his	hisN: histidinol-phosphate phosphatase	Desulfallas geothermicus DSM 3669	BM299_RS15995	BM299_RS02165
his	hisN: histidinol-phosphate phosphatase	Desulfarculus baarsii DSM 2075	DEBA_RS07130	DEBA_RS04350		known gap
his	hisN: histidinol-phosphate phosphatase	Desulfatibacillum aliphaticivorans DSM 15576	G491_RS30500	G491_RS0109105
his	hisN: histidinol-phosphate phosphatase	Desulfitobacterium hafniense DCB-2	DHAF_RS20375	DHAF_RS07455
his	hisN: histidinol-phosphate phosphatase	Desulfobacca acetoxidans DSM 11109	DESAC_RS14005	DESAC_RS09210		known gap
his	hisN: histidinol-phosphate phosphatase	Desulfobacter vibrioformis DSM 8776	Q366_RS04490	Q366_RS03600	spurious	known gap
his	hisN: histidinol-phosphate phosphatase	Desulfobulbus mediterraneus DSM 13871	G494_RS0111655		spurious	known gap
his	hisN: histidinol-phosphate phosphatase	Desulfotalea psychrophila LSv54	DP_RS06735			known gap
his	hisN: histidinol-phosphate phosphatase	Desulfovibrio bastinii DSM 16055	G496_RS0118070	G496_RS0107385		known gap
his	hisN: histidinol-phosphate phosphatase	Desulfovibrio gracilis DSM 16080	B5D49_RS00050	B5D49_RS06110		known gap
his	hisN: histidinol-phosphate phosphatase	Desulfovibrio oxyclinae DSM 11498	B149_RS0104715	B149_RS0111010		known gap
his	hisN: histidinol-phosphate phosphatase	Desulfovibrio zosterae DSM 11974	H589_RS0112390	H589_RS0114445		known gap
his	hisN: histidinol-phosphate phosphatase	Desulfurobacterium atlanticum DSM 15668	CHB58_RS01910	CHB58_RS02010		known gap
his	hisN: histidinol-phosphate phosphatase	Desulfuromonas acetexigens	BQ4888_RS07550	BQ4888_RS03340		known gap
his	hisN: histidinol-phosphate phosphatase	Desulfuromusa kysingii DSM 7343	BLU87_RS04775			known gap
his	hisN: histidinol-phosphate phosphatase	Ferroglobus placidus DSM 10642	FERP_RS05525			known gap
his	hisN: histidinol-phosphate phosphatase	Geobacter lovleyi SZ	GLOV_RS04040	GLOV_RS01995		known gap
his	hisN: histidinol-phosphate phosphatase	Geobacter metallireducens GS-15	GMET_RS01925	GMET_RS03500		known gap
his	hisN: histidinol-phosphate phosphatase	Geobacter uraniireducens Rf4	GURA_RS20630	GURA_RS17085		known gap
his	hisN: histidinol-phosphate phosphatase	Heliobacterium modesticaldum Ice1; ATCC 51547	HM1_RS09170	HM1_RS04270
his	hisN: histidinol-phosphate phosphatase	Kyrpidia tusciae DSM 2912	BTUS_RS10925	BTUS_RS05715		known gap
his	hisN: histidinol-phosphate phosphatase	Leptospirillum ferrooxidans C2-3	LFE_RS10415	LFE_RS12205		known gap
his	hisN: histidinol-phosphate phosphatase	Malonomonas rubra DSM 5091	BUB13_RS06010	BUB13_RS11515		known gap
his	hisN: histidinol-phosphate phosphatase	Methanobacterium lacus AL-21	METBO_RS00375			known gap
his	hisN: histidinol-phosphate phosphatase	Methanococcus aeolicus Nankai-3	MAEO_RS00710			known gap
his	hisN: histidinol-phosphate phosphatase	Methanococcus maripaludis C5	MMARC5_RS05350			known gap
his	hisN: histidinol-phosphate phosphatase	Methanosarcina acetivorans C2A	MA_RS01180			known gap
his	hisN: histidinol-phosphate phosphatase	Methanosarcina barkeri Fusaro	MBAR_RS07030			known gap (90% id.)
his	hisN: histidinol-phosphate phosphatase	Methanosarcina mazei Go1	MM_RS07775			known gap
his	hisN: histidinol-phosphate phosphatase	Methanothermobacter thermautotrophicus Delta H	MTH_RS07010			known gap
his	hisN: histidinol-phosphate phosphatase	Nitratifractor salsuginis DSM 16511	NITSA_RS03500	NITSA_RS04790
his	hisN: histidinol-phosphate phosphatase	Nitratiruptor tergarcus DSM 16512	B8779_RS00360	B8779_RS06750
his	hisN: histidinol-phosphate phosphatase	Nostoc punctiforme ATCC 29133; PCC 73102	NPUN_RS22840	NPUN_RS27880
his	hisN: histidinol-phosphate phosphatase	Pelobacter propionicus DSM 2379	PPRO_RS15085	PPRO_RS00085		known gap
his	hisN: histidinol-phosphate phosphatase	Persephonella marina EX-H1	PERMA_RS02725	PERMA_RS01120		known gap
his	hisN: histidinol-phosphate phosphatase	Pyrolobus fumarii 1A	PYRFU_RS08460			known gap
his	hisN: histidinol-phosphate phosphatase	Sulfuricurvum kujiense DSM 16994	SULKU_RS11025	SULKU_RS07205
his	hisN: histidinol-phosphate phosphatase	Sulfurihydrogenibium azorense Az-Fu1	SULAZ_RS04700	SULAZ_RS02345		known gap
his	hisN: histidinol-phosphate phosphatase	Sulfurihydrogenibium subterraneum DSM 15120	Q385_RS0107105	Q385_RS0102695		known gap
his	hisN: histidinol-phosphate phosphatase	Sulfurimonas denitrificans DSM 1251	SUDEN_RS09690	SUDEN_RS05675
his	hisN: histidinol-phosphate phosphatase	Thermocrinis albus DSM 14484	THAL_RS01500	THAL_RS05410	spurious	known gap
his	hisN: histidinol-phosphate phosphatase	Thermodesulforhabdus norvegica DSM 9990	BM091_RS12655	BM091_RS00250		known gap
his	hisN: histidinol-phosphate phosphatase	Thermovibrio ammonificans HB-1	THEAM_RS08080	THEAM_RS03365		known gap
his	hisN: histidinol-phosphate phosphatase	Trichodesmium erythraeum IMS101	TERY_RS09605	TERY_RS03605		known gap (100% id.)
his	hisN: histidinol-phosphate phosphatase	Trichormus variabilis ATCC 29413	AVA_RS16635	AVA_RS16870		known gap
his	prs: ribose-phosphate diphosphokinase	Nocardiopsis lucentensis DSM 44048
ile	cimA: (R)-citramalate synthase	Stenotrophomonas chelatiphaga DSM 21508	ABB28_RS14490
ile	ilvC: 2-hydroxy-3-ketol-acid reductoisomerase	Desulfotalea psychrophila LSv54
ile	ilvC: 2-hydroxy-3-ketol-acid reductoisomerase	Herbaspirillum autotrophicum IAM 14942	AKL27_RS26800	AKL27_RS09680
ile	ilvD: dihydroxy-acid dehydratase	Desulfotalea psychrophila LSv54			spurious	known gap
ile	ilvD: dihydroxy-acid dehydratase	Desulfovibrio oxyclinae DSM 11498				known gap
ile	ilvE: isoleucine transaminase	Nostoc punctiforme ATCC 29133; PCC 73102	NPUN_RS03530	NPUN_RS33160
ile	ilvE: isoleucine transaminase	Pyrolobus fumarii 1A	PYRFU_RS08035
ile	ilvE: isoleucine transaminase	Trichormus variabilis ATCC 29413	AVA_RS09755			known gap
ile	ilvH: acetolactate/acetohydroxybutanoate synthase regulatory subunit	Pyrolobus fumarii 1A	PYRFU_RS08325
ile	ilvI: acetolactate/acetohydroxybutanoate synthase catalytic subunit	Methanosarcina barkeri Fusaro	MBAR_RS02395	MBAR_RS02340
ile	ilvI: acetolactate/acetohydroxybutanoate synthase catalytic subunit	Nocardiopsis lucentensis DSM 44048	D471_RS0116105		spurious	known gap
ile	ilvI: acetolactate/acetohydroxybutanoate synthase catalytic subunit	Trichodesmium erythraeum IMS101	TERY_RS09095
ile	leuB: 3-methylmalate dehydrogenase / 3-isopropylmalate dehydrogenase	Methanosarcina acetivorans C2A	MA_RS19530	MA_RS01080
ile	leuB: 3-methylmalate dehydrogenase / 3-isopropylmalate dehydrogenase	Methanosarcina barkeri Fusaro	MBAR_RS01400	MBAR_RS07185
ile	leuB: 3-methylmalate dehydrogenase / 3-isopropylmalate dehydrogenase	Methanosarcina mazei Go1	MM_RS03355	MM_RS07685
ile	leuD: 3-isopropylmalate dehydaratase / citramalate isomerase, small subunit	Acidimicrobium ferrooxidans DSM 10331	AFER_RS07935	AFER_RS07275
ile	leuD: 3-isopropylmalate dehydaratase / citramalate isomerase, small subunit	Leptospirillum ferrooxidans C2-3	LFE_RS04105	LFE_RS09315
ile	leuD: 3-isopropylmalate dehydaratase / citramalate isomerase, small subunit	Methylohalobius crimeensis 10Ki	H035_RS0104800	H035_RS0101725
leu	ilvC: 2-hydroxy-3-ketol-acid reductoisomerase	Desulfotalea psychrophila LSv54
leu	ilvC: 2-hydroxy-3-ketol-acid reductoisomerase	Herbaspirillum autotrophicum IAM 14942	AKL27_RS26800	AKL27_RS09680
leu	ilvD: dihydroxy-acid dehydratase	Desulfotalea psychrophila LSv54			spurious	known gap
leu	ilvD: dihydroxy-acid dehydratase	Desulfovibrio oxyclinae DSM 11498				known gap
leu	ilvE: leucine transaminase	Nostoc punctiforme ATCC 29133; PCC 73102	NPUN_RS03530	NPUN_RS33160
leu	ilvE: leucine transaminase	Pyrolobus fumarii 1A	PYRFU_RS08035
leu	ilvE: leucine transaminase	Trichormus variabilis ATCC 29413	AVA_RS09755			known gap
leu	ilvH: acetolactate/acetohydroxybutanoate synthase regulatory subunit	Pyrolobus fumarii 1A	PYRFU_RS08325
leu	ilvI: acetolactate/acetohydroxybutanoate synthase catalytic subunit	Methanosarcina barkeri Fusaro	MBAR_RS02395	MBAR_RS02340
leu	ilvI: acetolactate/acetohydroxybutanoate synthase catalytic subunit	Nocardiopsis lucentensis DSM 44048	D471_RS0116105		spurious	known gap
leu	ilvI: acetolactate/acetohydroxybutanoate synthase catalytic subunit	Trichodesmium erythraeum IMS101	TERY_RS09095
leu	leuA: 2-isopropylmalate synthase	Desulfobacter vibrioformis DSM 8776	Q366_RS14820	Q366_RS15935
leu	leuA: 2-isopropylmalate synthase	Haloglycomyces albus DSM 45210	HALAL_RS0116090
leu	leuA: 2-isopropylmalate synthase	Halomonas desiderata SP1				known gap
leu	leuB: 3-methylmalate dehydrogenase / 3-isopropylmalate dehydrogenase	Methanosarcina acetivorans C2A	MA_RS19530	MA_RS01080
leu	leuB: 3-methylmalate dehydrogenase / 3-isopropylmalate dehydrogenase	Methanosarcina barkeri Fusaro	MBAR_RS01400	MBAR_RS07185
leu	leuB: 3-methylmalate dehydrogenase / 3-isopropylmalate dehydrogenase	Methanosarcina mazei Go1	MM_RS03355	MM_RS07685
leu	leuD: 3-isopropylmalate dehydaratase / citramalate isomerase, small subunit	Acidimicrobium ferrooxidans DSM 10331	AFER_RS07935	AFER_RS07275
leu	leuD: 3-isopropylmalate dehydaratase / citramalate isomerase, small subunit	Acidithiobacillus ferrooxidans ATCC 23270	AFE_RS02940	AFE_RS01995
leu	leuD: 3-isopropylmalate dehydaratase / citramalate isomerase, small subunit	Allochromatium vinosum DSM 180	ALVIN_RS07965	ALVIN_RS00390
leu	leuD: 3-isopropylmalate dehydaratase / citramalate isomerase, small subunit	Desulfobulbus mediterraneus DSM 13871	G494_RS0100220	G494_RS0118470
leu	leuD: 3-isopropylmalate dehydaratase / citramalate isomerase, small subunit	Desulfotalea psychrophila LSv54	DP_RS10020	DP_RS00645
leu	leuD: 3-isopropylmalate dehydaratase / citramalate isomerase, small subunit	Desulfuromonas acetexigens	BQ4888_RS00460	BQ4888_RS06920
leu	leuD: 3-isopropylmalate dehydaratase / citramalate isomerase, small subunit	Desulfuromusa kysingii DSM 7343	BLU87_RS11905	BLU87_RS05675
leu	leuD: 3-isopropylmalate dehydaratase / citramalate isomerase, small subunit	Geobacter lovleyi SZ	GLOV_RS15655	GLOV_RS07970
leu	leuD: 3-isopropylmalate dehydaratase / citramalate isomerase, small subunit	Geobacter metallireducens GS-15	GMET_RS06390	GMET_RS13850
leu	leuD: 3-isopropylmalate dehydaratase / citramalate isomerase, small subunit	Geobacter uraniireducens Rf4	GURA_RS18885	GURA_RS06455
leu	leuD: 3-isopropylmalate dehydaratase / citramalate isomerase, small subunit	Halorhodospira halophila SL1	HHAL_RS09135	HHAL_RS07115
leu	leuD: 3-isopropylmalate dehydaratase / citramalate isomerase, small subunit	Leptospirillum ferrooxidans C2-3	LFE_RS04105	LFE_RS09315
leu	leuD: 3-isopropylmalate dehydaratase / citramalate isomerase, small subunit	Methylohalobius crimeensis 10Ki	H035_RS0104800	H035_RS0101725
leu	leuD: 3-isopropylmalate dehydaratase / citramalate isomerase, small subunit	Thermithiobacillus tepidarius DSM 3134	G579_RS0103425	G579_RS0113635
lys	dapA: 4-hydroxy-tetrahydrodipicolinate synthase	Methanothermobacter thermautotrophicus Delta H			spurious	known gap
lys	dapB: 4-hydroxy-tetrahydrodipicolinate reductase	Chlorobium phaeobacteroides BS1	CPHAMN1_RS10380
lys	dapB: 4-hydroxy-tetrahydrodipicolinate reductase	Prosthecochloris aestuarii DSM 271	PAES_RS09415
lys	dapB: 4-hydroxy-tetrahydrodipicolinate reductase	Stenotrophomonas chelatiphaga DSM 21508	ABB28_RS13580
lys	dapC: N-succinyldiaminopimelate aminotransferase	Arcobacter nitrofigilis DSM 7299	ARNIT_RS14300	ARNIT_RS01155
lys	dapC: N-succinyldiaminopimelate aminotransferase	Caminibacter mediatlanticus TB-2	CMTB2_RS00510	CMTB2_RS01140
lys	dapC: N-succinyldiaminopimelate aminotransferase	Nitratifractor salsuginis DSM 16511	NITSA_RS10120	NITSA_RS09790
lys	dapC: N-succinyldiaminopimelate aminotransferase	Nitratiruptor tergarcus DSM 16512	B8779_RS08925	B8779_RS08250
lys	dapC: N-succinyldiaminopimelate aminotransferase	Sulfuricurvum kujiense DSM 16994	SULKU_RS04095	SULKU_RS11860
lys	dapC: N-succinyldiaminopimelate aminotransferase	Sulfurimonas denitrificans DSM 1251	SUDEN_RS03970	SUDEN_RS06570
lys	dapD: tetrahydrodipicolinate succinylase	Caminibacter mediatlanticus TB-2	CMTB2_RS05565
lys	dapF: diaminopimelate epimerase	Methanosarcina acetivorans C2A				known gap
lys	dapF: diaminopimelate epimerase	Methanosarcina barkeri Fusaro				known gap (90% id.)
lys	dapF: diaminopimelate epimerase	Methanosarcina mazei Go1				known gap
lys	dapF: diaminopimelate epimerase	Methylocystis bryophila S285	B1812_RS00195
lys	dapF: diaminopimelate epimerase	Rhodobacter sphaeroides ATCC 17029	RSPH17029_RS13090
lys	dapF: diaminopimelate epimerase	Rhodospirillum rubrum ATCC 11170	Rru_A1183
lys	dapF: diaminopimelate epimerase	Stenotrophomonas chelatiphaga DSM 21508	ABB28_RS12205
lys	dapL: N-acetyl-diaminopimelate deacetylase	Clostridium kluyveri DSM 555	CKL_RS07285	CKL_RS03195		known gap
lys	DAPtransferase: L,L-diaminopimelate aminotransferase	Chlorobaculum parvum NCIB 8327	CPAR_RS04855	CPAR_RS04020
lys	DAPtransferase: L,L-diaminopimelate aminotransferase	Chlorobaculum tepidum TLS	CT1242
lys	DAPtransferase: L,L-diaminopimelate aminotransferase	Chlorobium limicola DSM 245	CLIM_RS06015	CLIM_RS09085
lys	DAPtransferase: L,L-diaminopimelate aminotransferase	Chlorobium phaeobacteroides BS1	CPHAMN1_RS06280	CPHAMN1_RS08875
lys	DAPtransferase: L,L-diaminopimelate aminotransferase	Prosthecochloris aestuarii DSM 271	PAES_RS04825
lys	DAPtransferase: L,L-diaminopimelate aminotransferase	Thioalkalivibrio halophilus HL17	B1A74_RS05205	B1A74_RS03745
lys	DAPtransferase: L,L-diaminopimelate aminotransferase	Thioalkalivibrio paradoxus ARh 1	THITH_RS04650	THITH_RS11500
lys	dapX: acetyl-diaminopimelate aminotransferase	Kyrpidia tusciae DSM 2912	BTUS_RS03510	BTUS_RS16335
lys	hicdh: homo-isocitrate dehydrogenase	Pyrolobus fumarii 1A	PYRFU_RS09335	PYRFU_RS05270
lys	lysA: diaminopimelate decarboxylase	Desulfallas geothermicus DSM 3669	BM299_RS12230
lys	lysA: diaminopimelate decarboxylase	Desulfobacter vibrioformis DSM 8776	Q366_RS09195
lys	lysA: diaminopimelate decarboxylase	Desulfobulbus mediterraneus DSM 13871	G494_RS0107965	G494_RS22485
lys	lysA: diaminopimelate decarboxylase	Desulfuromonas acetexigens	BQ4888_RS11435
lys	lysA: diaminopimelate decarboxylase	Desulfuromusa kysingii DSM 7343	BLU87_RS10740
lys	lysA: diaminopimelate decarboxylase	Geobacter lovleyi SZ	GLOV_RS14990
lys	lysA: diaminopimelate decarboxylase	Geobacter metallireducens GS-15	GMET_RS01100	GMET_RS10195
lys	lysA: diaminopimelate decarboxylase	Malonomonas rubra DSM 5091	BUB13_RS00270
lys	lysA: diaminopimelate decarboxylase	Pelobacter propionicus DSM 2379	PPRO_RS09900
lys	lysK: [LysW]-lysine hydrolase	Pyrolobus fumarii 1A	PYRFU_RS08530
lys	lysN: 2-aminoadipate:2-oxoglutarate aminotransferase	Pyrolobus fumarii 1A	PYRFU_RS08035	PYRFU_RS08855
lys	lysU: homoaconitase small subunit	Pyrolobus fumarii 1A	PYRFU_RS07965	PYRFU_RS03665
met	asd-S-ferredoxin: reductive sulfuration of L-aspartate semialdehyde, ferredoxin component	Archaeoglobus veneficus SNP6	ARCVE_RS05390
met	asd-S-ferredoxin: reductive sulfuration of L-aspartate semialdehyde, ferredoxin component	Crocosphaera subtropica ATCC 51142	CCE_RS04625
met	asd-S-ferredoxin: reductive sulfuration of L-aspartate semialdehyde, ferredoxin component	Desulfarculus baarsii DSM 2075	DEBA_RS15765
met	asd-S-ferredoxin: reductive sulfuration of L-aspartate semialdehyde, ferredoxin component	Ferroglobus placidus DSM 10642	FERP_RS09805
met	asd-S-ferredoxin: reductive sulfuration of L-aspartate semialdehyde, ferredoxin component	Methanococcus aeolicus Nankai-3	MAEO_RS03975
met	asd-S-ferredoxin: reductive sulfuration of L-aspartate semialdehyde, ferredoxin component	Methanococcus maripaludis C5	MMARC5_RS01115	MMARC5_RS00585
met	asd-S-ferredoxin: reductive sulfuration of L-aspartate semialdehyde, ferredoxin component	Methanothermobacter thermautotrophicus Delta H	MTH_RS04025	MTH_RS04380
met	asd-S-ferredoxin: reductive sulfuration of L-aspartate semialdehyde, ferredoxin component	Thermovibrio ammonificans HB-1	THEAM_RS00955
met	asd-S-ferredoxin: reductive sulfuration of L-aspartate semialdehyde, ferredoxin component	Trichodesmium erythraeum IMS101	TERY_RS06965
met	asd-S-perS: putative persulfide forming protein	Crocosphaera subtropica ATCC 51142				known gap
met	asd-S-perS: putative persulfide forming protein	Dehalococcoides mccartyi 195	DET_RS04785
met	asd-S-perS: putative persulfide forming protein	Desulfatibacillum aliphaticivorans DSM 15576	G491_RS0114640
met	asd-S-perS: putative persulfide forming protein	Desulfatiglans anilini DSM 4660	H567_RS0107765
met	asd-S-perS: putative persulfide forming protein	Desulfobacca acetoxidans DSM 11109	DESAC_RS10290
met	asd-S-perS: putative persulfide forming protein	Desulfobacter vibrioformis DSM 8776	Q366_RS07305
met	asd-S-perS: putative persulfide forming protein	Desulfurobacterium atlanticum DSM 15668	CHB58_RS01920
met	asd-S-perS: putative persulfide forming protein	Methanothermobacter thermautotrophicus Delta H	MTH_RS03410
met	asd-S-perS: putative persulfide forming protein	Thermodesulforhabdus norvegica DSM 9990	BM091_RS02260
met	asd-S-perS: putative persulfide forming protein	Thermovibrio ammonificans HB-1	THEAM_RS06115
met	asd-S-perS: putative persulfide forming protein	Trichodesmium erythraeum IMS101				known gap (100% id.)
met	B12-reactivation-domain: MetH reactivation domain	Desulfobulbus mediterraneus DSM 13871	G494_RS0103145
met	B12-reactivation-domain: MetH reactivation domain	Desulfuromusa kysingii DSM 7343	BLU87_RS06905
met	B12-reactivation-domain: MetH reactivation domain	Haloglycomyces albus DSM 45210	HALAL_RS0113755
met	B12-reactivation-domain: MetH reactivation domain	Heliobacterium modesticaldum Ice1; ATCC 51547	HM1_RS11405
met	B12-reactivation-domain: MetH reactivation domain	Leptospirillum ferrooxidans C2-3	LFE_RS08450
met	B12-reactivation-domain: MetH reactivation domain	Thermomonospora curvata DSM 43183	TCUR_RS11345
met	hom: homoserine dehydrogenase	Pyrolobus fumarii 1A	PYRFU_RS06440			known gap
met	hom_kinase: homoserine kinase	Acidimicrobium ferrooxidans DSM 10331	AFER_RS03340	AFER_RS01155
met	mesB: Methylcobalamin:homocysteine methyltransferase MesB	Desulfacinum hydrothermale DSM 13146	B9A12_RS10415
met	mesB: Methylcobalamin:homocysteine methyltransferase MesB	Desulfacinum infernum DSM 9756	BUB04_RS04080
met	mesB: Methylcobalamin:homocysteine methyltransferase MesB	Desulfallas geothermicus DSM 3669	BM299_RS16000
met	mesB: Methylcobalamin:homocysteine methyltransferase MesB	Desulfarculus baarsii DSM 2075	DEBA_RS11000
met	mesB: Methylcobalamin:homocysteine methyltransferase MesB	Desulfatibacillum aliphaticivorans DSM 15576	G491_RS0128095
met	mesB: Methylcobalamin:homocysteine methyltransferase MesB	Desulfatiglans anilini DSM 4660	H567_RS0109315
met	mesB: Methylcobalamin:homocysteine methyltransferase MesB	Desulfitobacterium hafniense DCB-2	DHAF_RS11500
met	mesB: Methylcobalamin:homocysteine methyltransferase MesB	Thermodesulforhabdus norvegica DSM 9990	BM091_RS04305
met	mesC: Methylcobalamin:homocysteine methyltransferase MesC	Archaeoglobus veneficus SNP6	ARCVE_RS08725
met	mesC: Methylcobalamin:homocysteine methyltransferase MesC	Ferroglobus placidus DSM 10642	FERP_RS08670
met	mesC: Methylcobalamin:homocysteine methyltransferase MesC	Methanosarcina acetivorans C2A	MA_RS00270	MA_RS18535
met	mesC: Methylcobalamin:homocysteine methyltransferase MesC	Methanosarcina barkeri Fusaro	MBAR_RS05505	MBAR_RS05510
met	mesC: Methylcobalamin:homocysteine methyltransferase MesC	Methanosarcina mazei Go1	MM_RS07010	MM_RS02470
met	metB: cystathionine gamma-synthase	Acidimicrobium ferrooxidans DSM 10331	AFER_RS07735			known gap
met	metB: cystathionine gamma-synthase	Leptospirillum ferrooxidans C2-3	LFE_RS02030
met	metB: cystathionine gamma-synthase	Persephonella marina EX-H1				known gap
met	metB: cystathionine gamma-synthase	Pyrolobus fumarii 1A	PYRFU_RS03465
met	metB: cystathionine gamma-synthase	Sulfurihydrogenibium azorense Az-Fu1				known gap
met	metB: cystathionine gamma-synthase	Sulfurihydrogenibium subterraneum DSM 15120				known gap
met	metB: cystathionine gamma-synthase	Thermocrinis albus DSM 14484				known gap
met	metC: cystathionine beta-lyase	Acidimicrobium ferrooxidans DSM 10331	AFER_RS07735	AFER_RS10005
met	metC: cystathionine beta-lyase	Haloechinothrix alba DSM 45207	CHB84_RS02120	CHB84_RS07990
met	metC: cystathionine beta-lyase	Haloglycomyces albus DSM 45210	HALAL_RS0104995	HALAL_RS0101720
met	metC: cystathionine beta-lyase	Leptospirillum ferrooxidans C2-3	LFE_RS02030	LFE_RS07250
met	metC: cystathionine beta-lyase	Nocardiopsis lucentensis DSM 44048	D471_RS0107605	D471_RS0102240
met	metC: cystathionine beta-lyase	Persephonella marina EX-H1				known gap
met	metC: cystathionine beta-lyase	Pyrolobus fumarii 1A	PYRFU_RS03465
met	metC: cystathionine beta-lyase	Sulfurihydrogenibium azorense Az-Fu1	SULAZ_RS01475			known gap
met	metC: cystathionine beta-lyase	Sulfurihydrogenibium subterraneum DSM 15120	Q385_RS0103460			known gap
met	metC: cystathionine beta-lyase	Thermocrinis albus DSM 14484				known gap
met	metE: vitamin B12-independent methionine synthase	Acidithiobacillus ferrooxidans ATCC 23270	AFE_RS01365
met	metH: vitamin B12-dependent methionine synthase	Desulfotalea psychrophila LSv54	DP_RS11245 with DP_RS11240
met	metH: vitamin B12-dependent methionine synthase	Desulfuromusa kysingii DSM 7343	BLU87_RS06905 with BLU87_RS06900
met	split_metE_1: vitamin B12-independent methionine synthase, folate-binding component	Pyrolobus fumarii 1A	PYRFU_RS09465
met	split_metE_2: vitamin B12-independent methionine synthase, catalytic component	Pyrolobus fumarii 1A	PYRFU_RS01495
phe	aro-dehydratase: arogenate dehydratase	Chlorobaculum parvum NCIB 8327	CPAR_RS02680
phe	aro-dehydratase: arogenate dehydratase	Chlorobaculum tepidum TLS	CT1666
phe	aro-dehydratase: arogenate dehydratase	Chlorobium limicola DSM 245	CLIM_RS02420
phe	aro-dehydratase: arogenate dehydratase	Chlorobium phaeobacteroides BS1	CPHAMN1_RS02740
phe	aro-dehydratase: arogenate dehydratase	Desulfacinum hydrothermale DSM 13146	B9A12_RS07670
phe	aro-dehydratase: arogenate dehydratase	Desulfobulbus mediterraneus DSM 13871	G494_RS0101895
phe	aro-dehydratase: arogenate dehydratase	Desulfovibrio oxyclinae DSM 11498	B149_RS16240	B149_RS0112780
phe	aro-dehydratase: arogenate dehydratase	Halorhodospira halophila SL1
phe	aro-dehydratase: arogenate dehydratase	Methanosarcina acetivorans C2A			spurious	known gap
phe	aro-dehydratase: arogenate dehydratase	Prosthecochloris aestuarii DSM 271	PAES_RS02470
phe	aro-dehydratase: arogenate dehydratase	Pyrolobus fumarii 1A	PYRFU_RS06195
phe	aro-dehydratase: arogenate dehydratase	Thermodesulforhabdus norvegica DSM 9990	BM091_RS03430	BM091_RS06270
phe	cmutase: chorismate mutase	Halorhodospira halophila SL1	HHAL_RS10520
phe	cmutase: chorismate mutase	Methanobacterium lacus AL-21	METBO_RS01520	METBO_RS10195
phe	PPYAT: phenylpyruvate aminotransferase	Haloglycomyces albus DSM 45210	HALAL_RS0106545	HALAL_RS0107745
phe	preph-dehydratase: prephenate dehydratase	Acidimicrobium ferrooxidans DSM 10331	AFER_RS00495
phe	preph-dehydratase: prephenate dehydratase	Arcobacter nitrofigilis DSM 7299	ARNIT_RS02150
phe	preph-dehydratase: prephenate dehydratase	Bacillus alkalinitrilicus DSM 22532	BK574_RS13700
phe	preph-dehydratase: prephenate dehydratase	Caminibacter mediatlanticus TB-2	CMTB2_RS03830
phe	preph-dehydratase: prephenate dehydratase	Clostridium acetobutylicum ATCC 824	CA_C0217	CA_C3620
phe	preph-dehydratase: prephenate dehydratase	Clostridium kluyveri DSM 555	CKL_RS03870
phe	preph-dehydratase: prephenate dehydratase	Crocosphaera subtropica ATCC 51142	CCE_RS21960
phe	preph-dehydratase: prephenate dehydratase	Dehalococcoides mccartyi 195	DET_RS02500	DET_RS07920
phe	preph-dehydratase: prephenate dehydratase	Desulfitobacterium hafniense DCB-2	DHAF_RS15220
phe	preph-dehydratase: prephenate dehydratase	Desulfobacter vibrioformis DSM 8776	Q366_RS16530
phe	preph-dehydratase: prephenate dehydratase	Desulfotomaculum ruminis DSM 2154	DESRU_RS13125
phe	preph-dehydratase: prephenate dehydratase	Desulfovibrio bastinii DSM 16055	G496_RS0100775
phe	preph-dehydratase: prephenate dehydratase	Kyrpidia tusciae DSM 2912	BTUS_RS04750
phe	preph-dehydratase: prephenate dehydratase	Methanosarcina mazei Go1	MM_RS02000
phe	preph-dehydratase: prephenate dehydratase	Nitratifractor salsuginis DSM 16511	NITSA_RS01510
phe	preph-dehydratase: prephenate dehydratase	Nitratiruptor tergarcus DSM 16512	B8779_RS04265
phe	preph-dehydratase: prephenate dehydratase	Nostoc punctiforme ATCC 29133; PCC 73102	NPUN_RS19645
phe	preph-dehydratase: prephenate dehydratase	Sulfuricurvum kujiense DSM 16994	SULKU_RS09630
phe	preph-dehydratase: prephenate dehydratase	Sulfurimonas denitrificans DSM 1251	SUDEN_RS02465
phe	preph-dehydratase: prephenate dehydratase	Trichodesmium erythraeum IMS101	TERY_RS02265
phe	preph-dehydratase: prephenate dehydratase	Trichormus variabilis ATCC 29413	AVA_RS06500
phe	ptransferase: prephenate aminotransferase	Pyrolobus fumarii 1A	PYRFU_RS02975
pro	argC: N-acylglutamylphosphate reductase	Ferroglobus placidus DSM 10642	FERP_RS04630
pro	argC: N-acylglutamylphosphate reductase	Methanococcus aeolicus Nankai-3	MAEO_RS06695
pro	argC: N-acylglutamylphosphate reductase	Methanococcus maripaludis C5	MMARC5_RS07930	MMARC5_RS00960
pro	argC: N-acylglutamylphosphate reductase	Methanothermobacter thermautotrophicus Delta H	MTH_RS03985
pro	cyclodeaminase: ornithine cyclodeaminase	Pyrolobus fumarii 1A	PYRFU_RS04150			known gap
pro	lysK: [LysW]-ornithine hydrolase	Pyrolobus fumarii 1A	PYRFU_RS08530
pro	OAT: L-ornithine 5-aminotransferase	Calditerrivibrio nitroreducens DSM 19672	CALNI_RS07435	CALNI_RS03705
pro	proB: glutamate 5-kinase	Clostridium kluyveri DSM 555	CKL_RS13390	CKL_RS04535
pro	proB: glutamate 5-kinase	Nocardiopsis lucentensis DSM 44048	D471_RS0105990	D471_RS0106100
ser	serA: 3-phosphoglycerate dehydrogenase	Chlorobaculum parvum NCIB 8327	CPAR_RS05525		spurious	known gap
ser	serA: 3-phosphoglycerate dehydrogenase	Chlorobaculum tepidum TLS			spurious	known gap
ser	serA: 3-phosphoglycerate dehydrogenase	Chlorobium phaeobacteroides BS1	CPHAMN1_RS07770	CPHAMN1_RS06265
ser	serA: 3-phosphoglycerate dehydrogenase	Clostridium acetobutylicum ATCC 824	CA_C0015	CA_C1543
ser	serA: 3-phosphoglycerate dehydrogenase	Clostridium kluyveri DSM 555	CKL_RS18585	CKL_RS02155
ser	serA: 3-phosphoglycerate dehydrogenase	Desulfarculus baarsii DSM 2075	DEBA_RS03615			known gap
ser	serA: 3-phosphoglycerate dehydrogenase	Desulfitobacterium hafniense DCB-2	DHAF_RS22855	DHAF_RS10340
ser	serA: 3-phosphoglycerate dehydrogenase	Desulfobulbus mediterraneus DSM 13871	G494_RS0111735	G494_RS0111035
ser	serA: 3-phosphoglycerate dehydrogenase	Desulfotalea psychrophila LSv54	DP_RS08685
ser	serA: 3-phosphoglycerate dehydrogenase	Desulfovibrio bastinii DSM 16055	G496_RS19260	G496_RS0117515	spurious	known gap
ser	serA: 3-phosphoglycerate dehydrogenase	Desulfovibrio gracilis DSM 16080	B5D49_RS12715		spurious	known gap
ser	serA: 3-phosphoglycerate dehydrogenase	Desulfovibrio oxyclinae DSM 11498	B149_RS0109925		spurious	known gap
ser	serA: 3-phosphoglycerate dehydrogenase	Desulfovibrio zosterae DSM 11974	H589_RS19615	H589_RS0111585	spurious	known gap
ser	serA: 3-phosphoglycerate dehydrogenase	Hyphomicrobium sulfonivorans WDL6	APY04_RS11295	APY04_RS09155		known gap
ser	serA: 3-phosphoglycerate dehydrogenase	Methyloferula stellata AR4T	A3OQ_RS0116535	A3OQ_RS0106245		known gap
ser	serA: 3-phosphoglycerate dehydrogenase	Methylohalobius crimeensis 10Ki	H035_RS0104745	H035_RS0106600
ser	serA: 3-phosphoglycerate dehydrogenase	Prosthecochloris aestuarii DSM 271			spurious	known gap
ser	serA: 3-phosphoglycerate dehydrogenase	Sulfuritalea hydrogenivorans DSM 22779	SUTH_RS09885	SUTH_RS17940
ser	serB: phosphoserine phosphatase	Acidimicrobium ferrooxidans DSM 10331	AFER_RS09950	AFER_RS04610
ser	serB: phosphoserine phosphatase	Ammonifex degensii KC4	ADEG_RS07390	ADEG_RS06135
ser	serB: phosphoserine phosphatase	Calditerrivibrio nitroreducens DSM 19672				known gap
ser	serB: phosphoserine phosphatase	Clostridium kluyveri DSM 555	CKL_RS00935	CKL_RS02155
ser	serB: phosphoserine phosphatase	Crocosphaera subtropica ATCC 51142	CCE_RS19655	CCE_RS10125
ser	serB: phosphoserine phosphatase	Dehalococcoides mccartyi 195	DET_RS03630
ser	serB: phosphoserine phosphatase	Denitrovibrio acetiphilus DSM 12809				known gap
ser	serB: phosphoserine phosphatase	Desulfacinum hydrothermale DSM 13146	B9A12_RS06340	B9A12_RS05120		known gap
ser	serB: phosphoserine phosphatase	Desulfacinum infernum DSM 9756	BUB04_RS14555	BUB04_RS06135		known gap
ser	serB: phosphoserine phosphatase	Desulfallas geothermicus DSM 3669	BM299_RS04405	BM299_RS17355
ser	serB: phosphoserine phosphatase	Desulfarculus baarsii DSM 2075	DEBA_RS01805	DEBA_RS03615
ser	serB: phosphoserine phosphatase	Desulfatiglans anilini DSM 4660	H567_RS0101025	H567_RS0117800		known gap
ser	serB: phosphoserine phosphatase	Desulfitobacterium hafniense DCB-2	DHAF_RS22855	DHAF_RS14915	spurious	known gap
ser	serB: phosphoserine phosphatase	Desulfobacca acetoxidans DSM 11109	DESAC_RS06355	DESAC_RS13730		known gap
ser	serB: phosphoserine phosphatase	Desulfobulbus mediterraneus DSM 13871	G494_RS21775	G494_RS0116475		known gap
ser	serB: phosphoserine phosphatase	Desulfotalea psychrophila LSv54	DP_RS08685			known gap
ser	serB: phosphoserine phosphatase	Desulfotomaculum ruminis DSM 2154	DESRU_RS00110	DESRU_RS09935		known gap
ser	serB: phosphoserine phosphatase	Desulfuromusa kysingii DSM 7343	BLU87_RS16615	BLU87_RS05965		known gap
ser	serB: phosphoserine phosphatase	Geobacter lovleyi SZ	GLOV_RS13540	GLOV_RS10410
ser	serB: phosphoserine phosphatase	Geobacter metallireducens GS-15	GMET_RS02345	GMET_RS11915	spurious	known gap
ser	serB: phosphoserine phosphatase	Geobacter uraniireducens Rf4	GURA_RS21280	GURA_RS09075	spurious	known gap
ser	serB: phosphoserine phosphatase	Haloglycomyces albus DSM 45210	HALAL_RS0103885	HALAL_RS0105715
ser	serB: phosphoserine phosphatase	Heliobacterium modesticaldum Ice1; ATCC 51547	HM1_RS11600	HM1_RS05105
ser	serB: phosphoserine phosphatase	Hyphomicrobium sulfonivorans WDL6	APY04_RS14490	APY04_RS12045		known gap
ser	serB: phosphoserine phosphatase	Kyrpidia tusciae DSM 2912	BTUS_RS03615	BTUS_RS09020
ser	serB: phosphoserine phosphatase	Leptospirillum ferrooxidans C2-3	LFE_RS06195			known gap
ser	serB: phosphoserine phosphatase	Malonomonas rubra DSM 5091	BUB13_RS14350	BUB13_RS02305		known gap
ser	serB: phosphoserine phosphatase	Methylomicrobium alcaliphilum 20Z	MEALZ_RS05030	MEALZ_RS05025
ser	serB: phosphoserine phosphatase	Methylomonas methanica MC09	METME_RS07465	METME_RS07460
ser	serB: phosphoserine phosphatase	Methylosarcina fibrata AML-C10	A3OW_RS0123130	A3OW_RS0104935
ser	serB: phosphoserine phosphatase	Methylovulum miyakonense HT12	METMI_RS0100115	METMI_RS0100120
ser	serB: phosphoserine phosphatase	Nostoc punctiforme ATCC 29133; PCC 73102	NPUN_RS02420	NPUN_RS29035
ser	serB: phosphoserine phosphatase	Pelobacter propionicus DSM 2379	PPRO_RS13955	PPRO_RS03595
ser	serB: phosphoserine phosphatase	Pyrolobus fumarii 1A				known gap
ser	serB: phosphoserine phosphatase	Stenotrophomonas chelatiphaga DSM 21508	ABB28_RS12365	ABB28_RS02005		known gap
ser	serB: phosphoserine phosphatase	Steroidobacter denitrificans DSM 18526	ACG33_RS01535	ACG33_RS02460		known gap
ser	serB: phosphoserine phosphatase	Thermodesulforhabdus norvegica DSM 9990	BM091_RS09805			known gap
ser	serB: phosphoserine phosphatase	Thioalkalivibrio denitrificans ALJD	B1C78_RS07080			known gap
ser	serB: phosphoserine phosphatase	Thioalkalivibrio halophilus HL17	B1A74_RS01040	B1A74_RS11150		known gap
ser	serB: phosphoserine phosphatase	Thioalkalivibrio paradoxus ARh 1	THITH_RS11205	THITH_RS07690
ser	serB: phosphoserine phosphatase	Thioalkalivibrio thiocyanodenitrificans ARhD 1	THITHI_RS0102410			known gap
ser	serB: phosphoserine phosphatase	Thiothrix lacustris DSM 21227	Q394_RS0104085	Q394_RS0102655	spurious	known gap
ser	serB: phosphoserine phosphatase	Trichodesmium erythraeum IMS101	TERY_RS20190	TERY_RS10350		known gap (100% id.)
ser	serB: phosphoserine phosphatase	Trichormus variabilis ATCC 29413	AVA_RS11010	AVA_RS19050
ser	serC: 3-phosphoserine aminotransferase	Ammonifex degensii KC4	ADEG_RS00045
ser	serC: 3-phosphoserine aminotransferase	Arcobacter nitrofigilis DSM 7299	ARNIT_RS01155			known gap
ser	serC: 3-phosphoserine aminotransferase	Calditerrivibrio nitroreducens DSM 19672	CALNI_RS01845
ser	serC: 3-phosphoserine aminotransferase	Caminibacter mediatlanticus TB-2	CMTB2_RS07320			known gap
ser	serC: 3-phosphoserine aminotransferase	Chlorobaculum parvum NCIB 8327	CPAR_RS10040
ser	serC: 3-phosphoserine aminotransferase	Chlorobaculum tepidum TLS	CT0070
ser	serC: 3-phosphoserine aminotransferase	Chlorobium limicola DSM 245	CLIM_RS11550
ser	serC: 3-phosphoserine aminotransferase	Clostridium kluyveri DSM 555	CKL_RS18530	CKL_RS18590
ser	serC: 3-phosphoserine aminotransferase	Dehalococcoides mccartyi 195	DET_RS03175
ser	serC: 3-phosphoserine aminotransferase	Denitrovibrio acetiphilus DSM 12809	DACET_RS12185
ser	serC: 3-phosphoserine aminotransferase	Desulfallas geothermicus DSM 3669	BM299_RS17360
ser	serC: 3-phosphoserine aminotransferase	Desulfarculus baarsii DSM 2075	DEBA_RS03610
ser	serC: 3-phosphoserine aminotransferase	Desulfobacca acetoxidans DSM 11109	DESAC_RS06350
ser	serC: 3-phosphoserine aminotransferase	Desulfotomaculum ruminis DSM 2154	DESRU_RS00105
ser	serC: 3-phosphoserine aminotransferase	Desulfovibrio bastinii DSM 16055	G496_RS0102925
ser	serC: 3-phosphoserine aminotransferase	Desulfovibrio gracilis DSM 16080	B5D49_RS02330
ser	serC: 3-phosphoserine aminotransferase	Desulfovibrio oxyclinae DSM 11498	B149_RS0100570
ser	serC: 3-phosphoserine aminotransferase	Desulfovibrio zosterae DSM 11974	H589_RS0107780
ser	serC: 3-phosphoserine aminotransferase	Desulfurobacterium atlanticum DSM 15668	CHB58_RS06165
ser	serC: 3-phosphoserine aminotransferase	Desulfuromonas acetexigens	BQ4888_RS12980
ser	serC: 3-phosphoserine aminotransferase	Geobacter lovleyi SZ	GLOV_RS16555
ser	serC: 3-phosphoserine aminotransferase	Geobacter metallireducens GS-15	GMET_RS15900
ser	serC: 3-phosphoserine aminotransferase	Geobacter uraniireducens Rf4	GURA_RS04390
ser	serC: 3-phosphoserine aminotransferase	Leptospirillum ferrooxidans C2-3	LFE_RS06190
ser	serC: 3-phosphoserine aminotransferase	Nitratifractor salsuginis DSM 16511	NITSA_RS09790			known gap
ser	serC: 3-phosphoserine aminotransferase	Nitratiruptor tergarcus DSM 16512	B8779_RS01105			known gap
ser	serC: 3-phosphoserine aminotransferase	Persephonella marina EX-H1	PERMA_RS01695
ser	serC: 3-phosphoserine aminotransferase	Prosthecochloris aestuarii DSM 271			spurious	known gap
ser	serC: 3-phosphoserine aminotransferase	Pyrolobus fumarii 1A	PYRFU_RS03405
ser	serC: 3-phosphoserine aminotransferase	Sulfuricurvum kujiense DSM 16994	SULKU_RS11860			known gap
ser	serC: 3-phosphoserine aminotransferase	Sulfurihydrogenibium azorense Az-Fu1	SULAZ_RS02850		spurious	known gap
ser	serC: 3-phosphoserine aminotransferase	Sulfurihydrogenibium subterraneum DSM 15120	Q385_RS0102205		spurious	known gap
ser	serC: 3-phosphoserine aminotransferase	Sulfurimonas denitrificans DSM 1251	SUDEN_RS00385			known gap
ser	serC: 3-phosphoserine aminotransferase	Thermocrinis albus DSM 14484	THAL_RS04470			known gap
ser	serC: 3-phosphoserine aminotransferase	Thermovibrio ammonificans HB-1	THEAM_RS01165			known gap
thr	hom: homoserine dehydrogenase	Archaeoglobus veneficus SNP6	ARCVE_RS07875	ARCVE_RS06785
thr	hom: homoserine dehydrogenase	Ferroglobus placidus DSM 10642	FERP_RS00305	FERP_RS04025
thr	hom: homoserine dehydrogenase	Methanococcus aeolicus Nankai-3	MAEO_RS06135	MAEO_RS03365
thr	hom: homoserine dehydrogenase	Methanococcus maripaludis C5	MMARC5_RS08730	MMARC5_RS02925
thr	hom: homoserine dehydrogenase	Methanosarcina acetivorans C2A	MA_RS13380	MA_RS00690
thr	hom: homoserine dehydrogenase	Methanosarcina barkeri Fusaro	MBAR_RS10080	MBAR_RS04635
thr	hom: homoserine dehydrogenase	Methanosarcina mazei Go1	MM_RS14055	MM_RS07335
thr	hom: homoserine dehydrogenase	Pyrolobus fumarii 1A	PYRFU_RS06440			known gap
thr	homK: putative homoserine phosphotransferase	Archaeoglobus veneficus SNP6	ARCVE_RS03055	ARCVE_RS02035
thr	homK: putative homoserine phosphotransferase	Calditerrivibrio nitroreducens DSM 19672	CALNI_RS04340
thr	homK: putative homoserine phosphotransferase	Dehalococcoides mccartyi 195	DET_RS08350
thr	homK: putative homoserine phosphotransferase	Denitrovibrio acetiphilus DSM 12809	DACET_RS07125
thr	homK: putative homoserine phosphotransferase	Desulfobacca acetoxidans DSM 11109	DESAC_RS10100
thr	homK: putative homoserine phosphotransferase	Ferroglobus placidus DSM 10642	FERP_RS10095	FERP_RS00855
thr	homK: putative homoserine phosphotransferase	Geobacter metallireducens GS-15	GMET_RS07200
thr	homK: putative homoserine phosphotransferase	Geobacter uraniireducens Rf4	GURA_RS12105
thr	homK: putative homoserine phosphotransferase	Methanobacterium lacus AL-21	METBO_RS05875	METBO_RS11325
thr	homK: putative homoserine phosphotransferase	Methanosarcina acetivorans C2A	MA_RS00695
thr	homK: putative homoserine phosphotransferase	Methanosarcina barkeri Fusaro	MBAR_RS04630
thr	homK: putative homoserine phosphotransferase	Methanosarcina mazei Go1	MM_RS07340
thr	homK: putative homoserine phosphotransferase	Methanothermobacter thermautotrophicus Delta H	MTH_RS01935	MTH_RS07620
thr	homK: putative homoserine phosphotransferase	Pelobacter propionicus DSM 2379	PPRO_RS03790
thr	homK: putative homoserine phosphotransferase	Thermodesulforhabdus norvegica DSM 9990	BM091_RS02580
thr	thrB: homoserine kinase	Acidimicrobium ferrooxidans DSM 10331	AFER_RS03340	AFER_RS01155
thr	thrB: homoserine kinase	Allochromatium vinosum DSM 180	ALVIN_RS15260			known gap
thr	thrB: homoserine kinase	Desulfacinum infernum DSM 9756	BUB04_RS09630	BUB04_RS09250
thr	thrB: homoserine kinase	Desulfarculus baarsii DSM 2075	DEBA_RS09240
thr	thrB: homoserine kinase	Desulfatibacillum aliphaticivorans DSM 15576	G491_RS0116465
thr	thrB: homoserine kinase	Desulfatiglans anilini DSM 4660	H567_RS0114935
thr	thrB: homoserine kinase	Desulfobulbus mediterraneus DSM 13871	G494_RS0102485
thr	thrB: homoserine kinase	Desulfotalea psychrophila LSv54	DP_RS12650
thr	thrB: homoserine kinase	Desulfuromonas acetexigens	BQ4888_RS16740
thr	thrB: homoserine kinase	Frankia alni ACN14A	FRAAL_RS25905
thr	thrB: homoserine kinase	Geobacter lovleyi SZ	GLOV_RS15295	GLOV_RS07865
thr	thrB: homoserine kinase	Halorhodospira halophila SL1	HHAL_RS11410			known gap
thr	thrB: homoserine kinase	Methylococcus capsulatus Bath	MCA_RS01625			known gap
thr	thrB: homoserine kinase	Methylohalobius crimeensis 10Ki	H035_RS0111500			known gap
thr	thrB: homoserine kinase	Methylomonas methanica MC09	METME_RS02095			known gap
thr	thrB: homoserine kinase	Methylosarcina fibrata AML-C10	A3OW_RS0105720			known gap
thr	thrB: homoserine kinase	Methylovulum miyakonense HT12	METMI_RS0114300			known gap
thr	thrB: homoserine kinase	Oleispira antarctica	OLEAN_RS00180	OLEAN_RS18425
thr	thrB: homoserine kinase	Rhodobacter sphaeroides ATCC 17029				known gap
thr	thrB: homoserine kinase	Sedimenticola selenatireducens DSM 17993	A3GO_RS0103785			known gap
thr	thrB: homoserine kinase	Sulfuritalea hydrogenivorans DSM 22779	SUTH_RS02930			known gap
thr	thrB: homoserine kinase	Thioalkalivibrio denitrificans ALJD	B1C78_RS16900	B1C78_RS14165
thr	thrB: homoserine kinase	Thioalkalivibrio halophilus HL17	B1A74_RS09290			known gap
thr	thrB: homoserine kinase	Thioalkalivibrio paradoxus ARh 1	THITH_RS14415			known gap
thr	thrB: homoserine kinase	Thioalkalivibrio thiocyanodenitrificans ARhD 1	THITHI_RS0111425	THITHI_RS0109475
thr	thrB: homoserine kinase	Thiohalomonas denitrificans HLD2	BLP65_RS14485			known gap
thr	thrB: homoserine kinase	Thiothrix lacustris DSM 21227	Q394_RS0111245		spurious	known gap
trp	IGPS: indole-3-glycerol phosphate synthase	Denitrovibrio acetiphilus DSM 12809	DACET_RS05910
trp	IGPS: indole-3-glycerol phosphate synthase	Desulfitobacterium hafniense DCB-2	DHAF_RS21825	DHAF_RS22210
trp	IGPS: indole-3-glycerol phosphate synthase	Methanobacterium lacus AL-21	METBO_RS10110
trp	IGPS: indole-3-glycerol phosphate synthase	Persephonella marina EX-H1	PERMA_RS04655
trp	IGPS: indole-3-glycerol phosphate synthase	Pyrolobus fumarii 1A	PYRFU_RS06835
trp	IGPS: indole-3-glycerol phosphate synthase	Steroidobacter denitrificans DSM 18526	ACG33_RS14855
trp	PRAI: phosphoribosylanthranilate isomerase	Arcobacter nitrofigilis DSM 7299	ARNIT_RS03610	ARNIT_RS10710
trp	PRAI: phosphoribosylanthranilate isomerase	Calditerrivibrio nitroreducens DSM 19672	CALNI_RS09815	CALNI_RS10855
trp	PRAI: phosphoribosylanthranilate isomerase	Chlorobaculum tepidum TLS	CT0477	CT0718
trp	PRAI: phosphoribosylanthranilate isomerase	Chlorobium phaeobacteroides BS1	CPHAMN1_RS02420	CPHAMN1_RS08180
trp	PRAI: phosphoribosylanthranilate isomerase	Clostridium kluyveri DSM 555	CKL_RS06395	CKL_RS06290
trp	PRAI: phosphoribosylanthranilate isomerase	Crocosphaera subtropica ATCC 51142	CCE_RS19555	CCE_RS04745
trp	PRAI: phosphoribosylanthranilate isomerase	Denitrovibrio acetiphilus DSM 12809	DACET_RS14095	DACET_RS05915
trp	PRAI: phosphoribosylanthranilate isomerase	Desulfovibrio bastinii DSM 16055	G496_RS0118080	G496_RS0100810
trp	PRAI: phosphoribosylanthranilate isomerase	Methanobacterium lacus AL-21	METBO_RS09670	METBO_RS10105
trp	PRAI: phosphoribosylanthranilate isomerase	Methanosarcina acetivorans C2A	MA_RS01175	MA_RS15670
trp	PRAI: phosphoribosylanthranilate isomerase	Methanosarcina mazei Go1	MM_RS07770	MM_RS14625
trp	PRAI: phosphoribosylanthranilate isomerase	Methanothermobacter thermautotrophicus Delta H	MTH_RS03970	MTH_RS07940
trp	PRAI: phosphoribosylanthranilate isomerase	Nostoc punctiforme ATCC 29133; PCC 73102	NPUN_RS00270	NPUN_RS08670
trp	PRAI: phosphoribosylanthranilate isomerase	Persephonella marina EX-H1	PERMA_RS02510	PERMA_RS08165
trp	PRAI: phosphoribosylanthranilate isomerase	Prosthecochloris aestuarii DSM 271	PAES_RS02210	PAES_RS04015
trp	PRAI: phosphoribosylanthranilate isomerase	Pyrolobus fumarii 1A	PYRFU_RS07130	PYRFU_RS03015
trp	PRAI: phosphoribosylanthranilate isomerase	Steroidobacter denitrificans DSM 18526	ACG33_RS14850
trp	PRAI: phosphoribosylanthranilate isomerase	Sulfurihydrogenibium azorense Az-Fu1	SULAZ_RS07545	SULAZ_RS00435
trp	PRAI: phosphoribosylanthranilate isomerase	Sulfurihydrogenibium subterraneum DSM 15120	Q385_RS0108120	Q385_RS0103945
trp	PRAI: phosphoribosylanthranilate isomerase	Thermodesulforhabdus norvegica DSM 9990	BM091_RS05045	BM091_RS08350
trp	PRAI: phosphoribosylanthranilate isomerase	Trichodesmium erythraeum IMS101	TERY_RS17895	TERY_RS18855
trp	PRAI: phosphoribosylanthranilate isomerase	Trichormus variabilis ATCC 29413	AVA_RS17065	AVA_RS12855
trp	trpA: indoleglycerol phosphate aldolase	Pyrolobus fumarii 1A			spurious	known gap
trp	trpE: anthranilate synthase subunit TrpE	Arcobacter nitrofigilis DSM 7299	ARNIT_RS04640	ARNIT_RS13865
trp	trpE: anthranilate synthase subunit TrpE	Calditerrivibrio nitroreducens DSM 19672	CALNI_RS04885	CALNI_RS09730
trp	trpE: anthranilate synthase subunit TrpE	Denitrovibrio acetiphilus DSM 12809	DACET_RS05895
trp	trpE: anthranilate synthase subunit TrpE	Desulfitobacterium hafniense DCB-2	DHAF_RS21850	DHAF_RS22210
trp	trpE: anthranilate synthase subunit TrpE	Kyrpidia tusciae DSM 2912	BTUS_RS09570	BTUS_RS05600
trp	trpE: anthranilate synthase subunit TrpE	Methanosarcina barkeri Fusaro	MBAR_RS19240
trp	trpE: anthranilate synthase subunit TrpE	Nocardiopsis lucentensis DSM 44048	D471_RS0103705	D471_RS0119075
tyr	aro-dehydr: arogenate dehydrogenase	Haloglycomyces albus DSM 45210	HALAL_RS0106280
tyr	aro-dehydr: arogenate dehydrogenase	Prosthecochloris aestuarii DSM 271	PAES_RS10770
tyr	cmutase: chorismate mutase	Halorhodospira halophila SL1	HHAL_RS10520
tyr	cmutase: chorismate mutase	Methanobacterium lacus AL-21	METBO_RS01520	METBO_RS10195
tyr	pre-dehydr: prephenate dehydrogenase	Acidimicrobium ferrooxidans DSM 10331	AFER_RS11020
tyr	pre-dehydr: prephenate dehydrogenase	Acidithiobacillus ferrooxidans ATCC 23270	AFE_RS04225	AFE_RS04210
tyr	pre-dehydr: prephenate dehydrogenase	Arcobacter nitrofigilis DSM 7299	ARNIT_RS08615
tyr	pre-dehydr: prephenate dehydrogenase	Calditerrivibrio nitroreducens DSM 19672	CALNI_RS00455	CALNI_RS00440
tyr	pre-dehydr: prephenate dehydrogenase	Caminibacter mediatlanticus TB-2	CMTB2_RS06045	CMTB2_RS03830
tyr	pre-dehydr: prephenate dehydrogenase	Chlorobaculum parvum NCIB 8327			spurious	known gap
tyr	pre-dehydr: prephenate dehydrogenase	Chlorobaculum tepidum TLS	CT0084		spurious	known gap
tyr	pre-dehydr: prephenate dehydrogenase	Chlorobium limicola DSM 245			spurious	known gap
tyr	pre-dehydr: prephenate dehydrogenase	Chlorobium phaeobacteroides BS1
tyr	pre-dehydr: prephenate dehydrogenase	Clostridium acetobutylicum ATCC 824	CA_C0893
tyr	pre-dehydr: prephenate dehydrogenase	Clostridium kluyveri DSM 555	CKL_RS03850
tyr	pre-dehydr: prephenate dehydrogenase	Dehalococcoides mccartyi 195	DET_RS02500		spurious	known gap
tyr	pre-dehydr: prephenate dehydrogenase	Denitrovibrio acetiphilus DSM 12809	DACET_RS14915	DACET_RS14930
tyr	pre-dehydr: prephenate dehydrogenase	Desulfacinum hydrothermale DSM 13146	B9A12_RS02865	B9A12_RS07670
tyr	pre-dehydr: prephenate dehydrogenase	Desulfacinum infernum DSM 9756	BUB04_RS02635	BUB04_RS01735
tyr	pre-dehydr: prephenate dehydrogenase	Desulfallas geothermicus DSM 3669	BM299_RS01580
tyr	pre-dehydr: prephenate dehydrogenase	Desulfarculus baarsii DSM 2075	DEBA_RS02390	DEBA_RS02395
tyr	pre-dehydr: prephenate dehydrogenase	Desulfatibacillum aliphaticivorans DSM 15576	G491_RS31305	G491_RS0117450
tyr	pre-dehydr: prephenate dehydrogenase	Desulfatiglans anilini DSM 4660	H567_RS22295	H567_RS0100660
tyr	pre-dehydr: prephenate dehydrogenase	Desulfitobacterium hafniense DCB-2	DHAF_RS16940
tyr	pre-dehydr: prephenate dehydrogenase	Desulfobacca acetoxidans DSM 11109	DESAC_RS13370
tyr	pre-dehydr: prephenate dehydrogenase	Desulfobulbus mediterraneus DSM 13871	G494_RS0101895			known gap
tyr	pre-dehydr: prephenate dehydrogenase	Desulfotalea psychrophila LSv54	DP_RS11090			known gap
tyr	pre-dehydr: prephenate dehydrogenase	Desulfotomaculum ruminis DSM 2154	DESRU_RS14955
tyr	pre-dehydr: prephenate dehydrogenase	Frankia alni ACN14A	FRAAL_RS09830
tyr	pre-dehydr: prephenate dehydrogenase	Heliobacterium modesticaldum Ice1; ATCC 51547	HM1_RS08660
tyr	pre-dehydr: prephenate dehydrogenase	Hydrogenovibrio halophilus DSM 15072	A377_RS0110545
tyr	pre-dehydr: prephenate dehydrogenase	Hydrogenovibrio kuenenii DSM 12350	N745_RS0105260	N745_RS0105250
tyr	pre-dehydr: prephenate dehydrogenase	Leptospirillum ferrooxidans C2-3	LFE_RS05280	LFE_RS05290
tyr	pre-dehydr: prephenate dehydrogenase	Methanococcus aeolicus Nankai-3	MAEO_RS05160
tyr	pre-dehydr: prephenate dehydrogenase	Nitratifractor salsuginis DSM 16511	NITSA_RS01440	NITSA_RS01510
tyr	pre-dehydr: prephenate dehydrogenase	Nitratiruptor tergarcus DSM 16512	B8779_RS04360	B8779_RS04265
tyr	pre-dehydr: prephenate dehydrogenase	Nitriliruptor alkaliphilus DSM 45188	NITAL_RS17220
tyr	pre-dehydr: prephenate dehydrogenase	Nocardiopsis lucentensis DSM 44048
tyr	pre-dehydr: prephenate dehydrogenase	Oleispira antarctica	OLEAN_RS07045	OLEAN_RS07035
tyr	pre-dehydr: prephenate dehydrogenase	Pseudarthrobacter sulfonivorans Ar51	AU252_RS02695
tyr	pre-dehydr: prephenate dehydrogenase	Pyrolobus fumarii 1A	PYRFU_RS07240
tyr	pre-dehydr: prephenate dehydrogenase	Steroidobacter denitrificans DSM 18526	ACG33_RS07095		spurious	known gap
tyr	pre-dehydr: prephenate dehydrogenase	Sulfuricurvum kujiense DSM 16994	SULKU_RS02200	SULKU_RS09630
tyr	pre-dehydr: prephenate dehydrogenase	Sulfurimonas denitrificans DSM 1251	SUDEN_RS03455
tyr	pre-dehydr: prephenate dehydrogenase	Thermodesulforhabdus norvegica DSM 9990	BM091_RS08660	BM091_RS03430
tyr	tyrB: tyrosine aminotransferase	Desulfovibrio zosterae DSM 11974	H589_RS0114540	H589_RS0113385
tyr	tyrB: tyrosine aminotransferase	Pyrolobus fumarii 1A	PYRFU_RS08035	PYRFU_RS02975
val	ilvC: 2-hydroxy-3-ketol-acid reductoisomerase	Desulfotalea psychrophila LSv54
val	ilvC: 2-hydroxy-3-ketol-acid reductoisomerase	Herbaspirillum autotrophicum IAM 14942	AKL27_RS26800	AKL27_RS09680
val	ilvD: dihydroxy-acid dehydratase	Desulfotalea psychrophila LSv54			spurious	known gap
val	ilvD: dihydroxy-acid dehydratase	Desulfovibrio oxyclinae DSM 11498				known gap
val	ilvE: valine transaminase	Nostoc punctiforme ATCC 29133; PCC 73102	NPUN_RS09855	NPUN_RS03530
val	ilvE: valine transaminase	Pyrolobus fumarii 1A	PYRFU_RS08035
val	ilvE: valine transaminase	Trichormus variabilis ATCC 29413	AVA_RS05535	AVA_RS10755
val	ilvH: acetolactate/acetohydroxybutanoate synthase regulatory subunit	Pyrolobus fumarii 1A	PYRFU_RS08325
val	ilvI: acetolactate/acetohydroxybutanoate synthase catalytic subunit	Methanosarcina barkeri Fusaro	MBAR_RS02395	MBAR_RS02340
val	ilvI: acetolactate/acetohydroxybutanoate synthase catalytic subunit	Nocardiopsis lucentensis DSM 44048	D471_RS0116105		spurious	known gap
val	ilvI: acetolactate/acetohydroxybutanoate synthase catalytic subunit	Trichodesmium erythraeum IMS101	TERY_RS09095

Confidence: high confidence medium confidence low confidence
? – known gap: despite the lack of a good candidate for this step, this organism (or a related organism) performs the pathway

This GapMind analysis is from Apr 10 2024. The underlying query database was built on Apr 09 2024.