L-proline biosynthesis

Analysis of pathway pro in 150 genomes

Genome	Best path
Acidimicrobium ferrooxidans DSM 10331	proB, proA, proC
Acidithiobacillus ferrooxidans ATCC 23270	proB, proA, proC
Alicycliphilus denitrificans K601	argJ, argB, argC, argD, cyclodeaminase
Allochromatium vinosum DSM 180	proB, proA, proC
Ammonifex degensii KC4	proB, proA, proC
Archaeoglobus veneficus SNP6	argJ, argB, argC, argD, cyclodeaminase
Arcobacter nitrofigilis DSM 7299	proB, proA, proC
Azoarcus sp. BH72	argJ, argB, argC, argD, OAT, proC
Azohydromonas australica DSM 1124	argJ, argB, argC, argD, cyclodeaminase
Azorhizobium caulinodans ORS 571	proB, proA, proC
Azospirillum lipoferum B510	argA, argB, argC, argD, argE, cyclodeaminase
Bacillus alkalinitrilicus DSM 22532	argJ, argB, argC, argD, OAT, proC
Beijerinckia indica ATCC 9039	argA, argB, argC, argD, argE, OAT, proC
Beijerinckia mobilis UQM 1969	argA, argB, argC, argD, argE, OAT, proC
Bradyrhizobium sp. BTAi1	proB, proA, proC
Burkholderia vietnamiensis G4	proB, proA, proC
Calditerrivibrio nitroreducens DSM 19672	argJ, argB, argC, argD, OAT, proC
Caminibacter mediatlanticus TB-2	proB, proA, proC
Chlorobaculum parvum NCIB 8327	proB, proA, proC
Chlorobaculum tepidum TLS	proB, proA, proC
Chlorobium limicola DSM 245	proB, proA, proC
Chlorobium phaeobacteroides BS1	proB, proA, proC
Clostridium acetobutylicum ATCC 824	proB, proA, proC
Clostridium kluyveri DSM 555	proB, proA, proC
Crocosphaera subtropica ATCC 51142	argJ, argB, argC, argD, cyclodeaminase
Dechloromonas agitata is5	argJ, argB, argC, argD, OAT, proC
Dehalococcoides mccartyi 195	proB, proA, proC
Denitrovibrio acetiphilus DSM 12809	proB, proA, proC
Derxia gummosa DSM 723	proB, proA, proC
Desulfacinum hydrothermale DSM 13146	argJ, argB, argC, argD, OAT, proC
Desulfacinum infernum DSM 9756	argJ, argB, argC, argD, OAT, proC
Desulfallas geothermicus DSM 3669	proB, proA, proC
Desulfarculus baarsii DSM 2075	proB, proA, proC
Desulfatibacillum aliphaticivorans DSM 15576	proB, proA, proC
Desulfatiglans anilini DSM 4660	proB, proA, proC
Desulfitobacterium hafniense DCB-2	proB, proA, proC
Desulfobacca acetoxidans DSM 11109	proB, proA, proC
Desulfobacter vibrioformis DSM 8776	argJ, argB, argC, argD, OAT, proC
Desulfobulbus mediterraneus DSM 13871	proB, proA, proC
Desulfotalea psychrophila LSv54	proB, proA, proC
Desulfotomaculum ruminis DSM 2154	argJ, argB, argC, argD, OAT, proC
Desulfovibrio bastinii DSM 16055	argJ, argB, argC, argD, OAT, proC
Desulfovibrio gracilis DSM 16080	argJ, argB, argC, argD, OAT, proC
Desulfovibrio oxyclinae DSM 11498	proB, proA, proC
Desulfovibrio zosterae DSM 11974	argJ, argB, argC, argD, OAT, proC
Desulfurobacterium atlanticum DSM 15668	proB, proA, proC
Desulfuromonas acetexigens	proB, proA, proC
Desulfuromusa kysingii DSM 7343	argJ, argB, argC, argD, OAT, proC
Ferroglobus placidus DSM 10642	argJ, argB, argC, argD, cyclodeaminase
Frankia alni ACN14A	proB, proA, proC
Geobacter lovleyi SZ	proB, proA, proC
Geobacter metallireducens GS-15	proB, proA, proC
Geobacter uraniireducens Rf4	proB, proA, proC
Haloechinothrix alba DSM 45207	argJ, argB, argC, argD, OAT, proC
Haloglycomyces albus DSM 45210	argJ, argB, argC, argD, cyclodeaminase
Halomonas desiderata SP1	proB, proA, proC
Halorhodospira halophila SL1	proB, proA, proC
Heliobacterium modesticaldum Ice1; ATCC 51547	proB, proA, proC
Herbaspirillum autotrophicum IAM 14942	argA, argB, argC, argD, argE, cyclodeaminase
Hydrogenophaga taeniospiralis NBRC 102512	argJ, argB, argC, argD, cyclodeaminase
Hydrogenovibrio halophilus DSM 15072	proB, proA, proC
Hydrogenovibrio kuenenii DSM 12350	proB, proA, proC
Hydrogenovibrio marinus DSM 11271	proB, proA, proC
Hyphomicrobium sulfonivorans WDL6	proB, proA, proC
Klebsiella variicola At-22	proB, proA, proC
Kyrpidia tusciae DSM 2912	argJ, argB, argC, argD, OAT, proC
Leptospirillum ferrooxidans C2-3	proB, proA, proC
Malonomonas rubra DSM 5091	proB, proA, proC
Mesorhizobium ciceri WSM1271	argA, argB, argC, argD, argE, cyclodeaminase
Methanobacterium lacus AL-21	argJ, argB, argC, argD, cyclodeaminase
Methanococcus aeolicus Nankai-3	argJ, argB, argC, argD, cyclodeaminase
Methanococcus maripaludis C5	argJ, argB, argC, argD, cyclodeaminase
Methanosarcina acetivorans C2A	proB, proA, proC
Methanosarcina barkeri Fusaro	proB, proA, proC
Methanosarcina mazei Go1	proB, proA, proC
Methanothermobacter thermautotrophicus Delta H	argJ, argB, argC, argD, cyclodeaminase
Methylobacterium nodulans ORS 2060	argA, argB, argC, argD, argE, cyclodeaminase
Methylobacterium sp. 4-46	argA, argB, argC, argD, argE, cyclodeaminase
Methylocapsa acidiphila B2	argA, argB, argC, argD, argE, OAT, proC
Methylocapsa aurea KYG T	argA, argB, argC, argD, argE, OAT, proC
Methylocella silvestris BL2	argA, argB, argC, argD, argE, OAT, proC
Methylococcus capsulatus Bath	proB, proA, proC
Methylocystis bryophila S285	argA, argB, argC, argD, argE, OAT, proC
Methyloferula stellata AR4T	proB, proA, proC
Methylohalobius crimeensis 10Ki	proB, proA, proC
Methylomicrobium alcaliphilum 20Z	argJ, argB, argC, argD, cyclodeaminase
Methylomonas methanica MC09	proB, proA, proC
Methylosarcina fibrata AML-C10	argJ, argB, argC, argD, cyclodeaminase
Methylovulum miyakonense HT12	proB, proA, proC
Mycolicibacterium vanbaalenii PYR-1	argJ, argB, argC, argD, OAT, proC
Nitratifractor salsuginis DSM 16511	proB, proA, proC
Nitratiruptor tergarcus DSM 16512	proB, proA, proC
Nitriliruptor alkaliphilus DSM 45188	argA, argB, argC, argD, argE, OAT, proC
Nocardiopsis lucentensis DSM 44048	proB, proA, proC
Nostoc punctiforme ATCC 29133; PCC 73102	argJ, argB, argC, argD, OAT, proC
Novosphingobium aromaticivorans DSM 12444	proB, proA, proC
Oleispira antarctica	proB, proA, proC
Paraburkholderia phymatum STM815	proB, proA, proC
Paraburkholderia sp. CCGE1002	proB, proA, proC
Pelobacter propionicus DSM 2379	proB, proA, proC
Persephonella marina EX-H1	proB, proA, proC
Polaromonas naphthalenivorans CJ2	argJ, argB, argC, argD, cyclodeaminase
Prosthecochloris aestuarii DSM 271	proB, proA, proC
Pseudarthrobacter sulfonivorans Ar51	proB, proA, proC
Pseudomonas benzenivorans DSM 8628	proB, proA, proC
Pseudomonas stutzeri A1501	proB, proA, proC
Pyrolobus fumarii 1A	lysW, argX, lysZ, lysY, lysJ, lysK, cyclodeaminase?
Rhizobium etli CFN 42	argA, argB, argC, argD, argE, OAT, proC
Rhizobium leguminosarum 3841	argA, argB, argC, argD, argE, OAT, proC
Rhizobium leguminosarum WSM1325	argA, argB, argC, argD, argE, OAT, proC
Rhodobacter sphaeroides ATCC 17029	proB, proA, proC
Rhodomicrobium vannielii ATCC 17100	argJ, argB, argC, argD, OAT, proC
Rhodopseudomonas palustris CGA009	proB, proA, proC
Rhodospirillum centenum SW; ATCC 51521	argJ, argB, argC, argD, OAT, proC
Rhodospirillum rubrum ATCC 11170	argJ, argB, argC, argD, OAT, proC
Saccharomonospora cyanea NA-134	argJ, argB, argC, argD, OAT, proC
Sedimenticola selenatireducens DSM 17993	argA, argB, argC, argD, argE, cyclodeaminase
Sinorhizobium fredii NGR234	argA, argB, argC, argD, argE, OAT, proC
Sinorhizobium medicae WSM419	proB, proA, proC
Sphingomonas wittichii RW1	argA, argB, argC, argD, argE, cyclodeaminase
Stenotrophomonas chelatiphaga DSM 21508	proB, proA, proC
Steroidobacter denitrificans DSM 18526	proB, proA, proC
Sulfuricurvum kujiense DSM 16994	proB, proA, proC
Sulfurihydrogenibium azorense Az-Fu1	proB, proA, proC
Sulfurihydrogenibium subterraneum DSM 15120	proB, proA, proC
Sulfurimonas denitrificans DSM 1251	proB, proA, proC
Sulfuritalea hydrogenivorans DSM 22779	proB, proA, proC
Sulfurivirga caldicuralii DSM 17737	proB, proA, proC
Teredinibacter turnerae T7901	proB, proA, proC
Thauera aminoaromatica S2	argJ, argB, argC, argD, cyclodeaminase
Thermithiobacillus tepidarius DSM 3134	proB, proA, proC
Thermocrinis albus DSM 14484	proB, proA, proC
Thermodesulforhabdus norvegica DSM 9990	proB, proA, proC
Thermomonospora curvata DSM 43183	argJ, argB, argC, argD, OAT, proC
Thermovibrio ammonificans HB-1	proB, proA, proC
Thioalkalivibrio denitrificans ALJD	proB, proA, proC
Thioalkalivibrio halophilus HL17	proB, proA, proC
Thioalkalivibrio paradoxus ARh 1	proB, proA, proC
Thioalkalivibrio thiocyanodenitrificans ARhD 1	proB, proA, proC
Thiohalomonas denitrificans HLD2	proB, proA, proC
Thiomicrorhabdus arctica DSM 13458	proB, proA, proC
Thiomicrorhabdus chilensis DSM 12352	proB, proA, proC
Thiomicrospira cyclica ALM1	proB, proA, proC
Thiomicrospira microaerophila ASL8-2	proB, proA, proC
Thiomicrospira pelophila DSM 1534	proB, proA, proC
Thiothrix lacustris DSM 21227	proB, proA, proC
Trichodesmium erythraeum IMS101	argJ, argB, argC, argD, cyclodeaminase
Trichormus variabilis ATCC 29413	argJ, argB, argC, argD, OAT, proC
Xanthobacter autotrophicus Py2	proB, proA, proC
Xenophilus azovorans DSM 13620	argA, argB, argC, argD, argE, cyclodeaminase

Confidence: high confidence medium confidence low confidence
? – known gap: despite the lack of a good candidate for this step, this organism (or a related organism) performs the pathway

This GapMind analysis is from Apr 10 2024. The underlying query database was built on Apr 09 2024.