Align 3-deoxy-7-phosphoheptulonate synthase, Trp-sensitive (EC 2.5.1.54) (characterized)
to candidate 7024556 Shewana3_1734 phospho-2-dehydro-3-deoxyheptonate aldolase (RefSeq)
Query= ecocyc::AROH-MONOMER (348 letters) >FitnessBrowser__ANA3:7024556 Length = 354 Score = 450 bits (1157), Expect = e-131 Identities = 217/341 (63%), Positives = 267/341 (78%) Query: 3 RTDELRTARIESLVTPAELALRYPVTPGVATHVTDSRRRIEKILNGEDKRLLVIIGPCSI 62 +TDELRT+ + +++PA+LA YP+T A ++ RR +E I+ GED+RLLVIIGPCSI Sbjct: 4 KTDELRTSLLAKVISPAQLASEYPLTQDAADYLVQQRREVEAIIMGEDQRLLVIIGPCSI 63 Query: 63 HDLTAAMEYATRLQSLRNQYQSRLEIVMRTYFEKPRTVVGWKGLISDPDLNGSYRVNHGL 122 HD AA++YA RL L + + L I+MR YFEKPRT+VGWKGLISDPDL+GS+ N GL Sbjct: 64 HDTQAALDYARRLAVLHQELKDDLCILMRVYFEKPRTIVGWKGLISDPDLDGSFEPNKGL 123 Query: 123 ELARKLLLQVNELGVPTATEFLDMVTGQFIADLISWGAIGARTTESQIHREMASALSCPV 182 +AR+LL Q+ EL +P ATEFLDMV GQ+IADLI+WGAIGARTTESQ+HREMASALSCPV Sbjct: 124 RIARELLQQITELKLPIATEFLDMVNGQYIADLITWGAIGARTTESQVHREMASALSCPV 183 Query: 183 GFKNGTDGNTRIAVDAIRAARASHMFLSPDKNGQMTIYQTSGNPYGHIIMRGGKKPNYHA 242 GFKNGTDGN IAVDA+RAA+ H+F SPDK+G M++Y+T GNPYGHII+RGGKKPNY Sbjct: 184 GFKNGTDGNINIAVDAVRAAKVPHIFYSPDKDGAMSVYRTHGNPYGHIILRGGKKPNYFE 243 Query: 243 DDIAAACDTLHEFDLPEHLVVDFSHGNCQKQHRRQLEVCEDICQQIRNGSTAIAGIMAES 302 DI A L D+ +VVDFSHGN +K H +QL V ++I Q+R GSTAIAG+MAES Sbjct: 244 QDIEEARLKLESVDVTPRMVVDFSHGNSEKNHLKQLVVADNIMAQMRAGSTAIAGVMAES 303 Query: 303 FLREGTQKIVGSQPLTYGQSITDPCLGWEDTERLVEKLASA 343 FL+EG QK+V QPL YGQSITD CL W+D+E+L+ LA A Sbjct: 304 FLQEGNQKVVEGQPLCYGQSITDACLHWDDSEKLLRDLAKA 344 Lambda K H 0.320 0.135 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 400 Number of extensions: 7 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 348 Length of database: 354 Length adjustment: 29 Effective length of query: 319 Effective length of database: 325 Effective search space: 103675 Effective search space used: 103675 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 49 (23.5 bits)
Align candidate 7024556 Shewana3_1734 (phospho-2-dehydro-3-deoxyheptonate aldolase (RefSeq))
to HMM TIGR00034 (3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54))
../bin/blast/fastacmd -i /tmp/list.29704.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.29704.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.