Align acetolactate synthase isozyme 2 large subunit; EC 2.2.1.6 (characterized)
to candidate 7023118 Shewana3_0356 acetolactate synthase 2 catalytic subunit (RefSeq)
Query= CharProtDB::CH_003896 (548 letters) >FitnessBrowser__ANA3:7023118 Length = 557 Score = 723 bits (1866), Expect = 0.0 Identities = 357/547 (65%), Positives = 429/547 (78%) Query: 1 MNGAQWVVHALRAQGVNTVFGYPGGAIMPVYDALYDGGVEHLLCRHEQGAAMAAIGYARA 60 + GA V+ L A GV TVFGYPGGAIMP+YDALY VEHLL RHEQGAA AA+GYARA Sbjct: 7 IRGADAVIKVLAAHGVTTVFGYPGGAIMPIYDALYGSPVEHLLSRHEQGAAFAAVGYARA 66 Query: 61 TGKTGVCIATSGPGATNLITGLADALLDSIPVVAITGQVSAPFIGTDAFQEVDVLGLSLA 120 +GKTGVC ATSGPGATNLIT LADALLDS+PVVAITGQVS IGTDAFQE+DVLG+SL+ Sbjct: 67 SGKTGVCFATSGPGATNLITSLADALLDSVPVVAITGQVSTAVIGTDAFQEIDVLGMSLS 126 Query: 121 CTKHSFLVQSLEELPRIMAEAFDVACSGRPGPVLVDIPKDIQLASGDLEPWFTTVENEVT 180 CTKHSF+V + +L + +AF++A SGRPGPVLVDIPKDIQ+A + V NE Sbjct: 127 CTKHSFMVTDVNDLIPTLYQAFEIAASGRPGPVLVDIPKDIQIAQLEYRTPLLAVTNEPQ 186 Query: 181 FPHAEVEQARQMLAKAQKPMLYVGGGVGMAQAVPALREFLAATKMPATCTLKGLGAVEAD 240 +E++ AR +LA+A++PMLYVGGGVGMA AV LREF+ AT MP+ TLKGLG++ Sbjct: 187 ASASEIDAARALLAEAKQPMLYVGGGVGMAGAVDQLREFIKATGMPSVATLKGLGSIAHG 246 Query: 241 YPYYLGMLGMHGTKAANFAVQECDLLIAVGARFDDRVTGKLNTFAPHASVIHMDIDPAEM 300 P YLGMLGMHG KAAN AVQ+CDLL+ GARFDDRVTG+L TFA A VIH+DID AE+ Sbjct: 247 TPGYLGMLGMHGGKAANLAVQDCDLLVVAGARFDDRVTGRLATFANKAKVIHLDIDAAEL 306 Query: 301 NKLRQAHVALQGDLNALLPALQQPLNQYDWQQHCAQLRDEHSWRYDHPGDAIYAPLLLKQ 360 KLRQ VA+ GDL + PAL LN WQ L +H W Y HPG IYAP +L++ Sbjct: 307 GKLRQPDVAIAGDLRQIFPALAMALNITPWQAEVEHLARKHQWDYQHPGSLIYAPAMLRR 366 Query: 361 LSDRKPADCVVTTDVGQHQMWAAQHIAHTRPENFITSSGLGTMGFGLPAAVGAQVARPND 420 L+++ P D VV DVGQHQMW AQH+ RPE+ ++S+GLGTMGFGLPAA+GAQVARP+ Sbjct: 367 LANKLPEDSVVCCDVGQHQMWVAQHMWFRRPEDHLSSAGLGTMGFGLPAAIGAQVARPDA 426 Query: 421 TVVCISGDGSFMMNVQELGTVKRKQLPLKIVLLDNQRLGMVRQWQQLFFQERYSETTLTD 480 TVV +SGDGSFMMNVQEL T+KR++LP+KI+L+DNQ+LGMV+QWQQLFF+ERYSET L+D Sbjct: 427 TVVTVSGDGSFMMNVQELTTIKRRKLPVKILLIDNQKLGMVKQWQQLFFEERYSETDLSD 486 Query: 481 NPDFLMLASAFGIHGQHITRKDQVEAALDTMLNSDGPYLLHVSIDELENVWPLVPPGASN 540 NPDF+ LASAF I G+ I D+VE AL ML + GPYLLHV+ID+ NVWPLVPPGASN Sbjct: 487 NPDFVQLASAFDIPGRTIFSSDEVEEALTEMLAAKGPYLLHVAIDDAFNVWPLVPPGASN 546 Query: 541 SEMLEKL 547 S+M++++ Sbjct: 547 SDMMDEM 553 Lambda K H 0.320 0.135 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 925 Number of extensions: 29 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 548 Length of database: 557 Length adjustment: 36 Effective length of query: 512 Effective length of database: 521 Effective search space: 266752 Effective search space used: 266752 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 53 (25.0 bits)
Align candidate 7023118 Shewana3_0356 (acetolactate synthase 2 catalytic subunit (RefSeq))
to HMM TIGR00118 (ilvB: acetolactate synthase, large subunit, biosynthetic type (EC 2.2.1.6))
../bin/blast/fastacmd -i /tmp/list.28023.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.28023.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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