Align acetolactate synthase (subunit 2/2) (EC 2.2.1.6) (characterized)
to candidate 7025106 Shewana3_2269 acetolactate synthase 3 catalytic subunit (RefSeq)
Query= BRENDA::P00893 (574 letters) >FitnessBrowser__ANA3:7025106 Length = 572 Score = 887 bits (2291), Expect = 0.0 Identities = 425/573 (74%), Positives = 491/573 (85%), Gaps = 2/573 (0%) Query: 1 MEMLSGAEMVVRSLIDQGVKQVFGYPGGAVLDIYDALHTVGGIDHVLVRHEQAAVHMADG 60 ME LSGA M+VRSLID+GVK +FGYPGG+VLDIYDALH + GI+H+LVRHEQAAVHMADG Sbjct: 1 MEKLSGASMIVRSLIDEGVKHIFGYPGGSVLDIYDALHLIPGIEHILVRHEQAAVHMADG 60 Query: 61 LARATGEVGVVLVTSGPGATNAITGIATAYMDSIPLVVLSGQVATSLIGYDAFQECDMVG 120 ARATG+VGVVLVTSGPGATNAITGIATAYMDSIPLVVLSGQV ++LIG DAFQECDM+G Sbjct: 61 YARATGKVGVVLVTSGPGATNAITGIATAYMDSIPLVVLSGQVPSNLIGNDAFQECDMIG 120 Query: 121 ISRPVVKHSFLVKQTEDIPQVLKKAFWLAASGRPGPVVVDLPKDILNPANKLPYVWPESV 180 ISRPVVKHSFLV+ IP+++KKAF++A++GRPGPVVVDLPKD LNPA Y++PES+ Sbjct: 121 ISRPVVKHSFLVQDPTQIPEIIKKAFYIASTGRPGPVVVDLPKDCLNPALLHDYIYPESI 180 Query: 181 SMRSYNPTTTGHKGQIKRALQTLVAAKKPVVYVGGGAITAGCHQQLKETVEALNLPVVCS 240 MRSYNPTT+GHKGQI+R LQ L+AAKKPV+YVGGGAI + C +Q+ E LN+PVV + Sbjct: 181 KMRSYNPTTSGHKGQIRRGLQALLAAKKPVLYVGGGAIISSCEKQILALAEKLNIPVVST 240 Query: 241 LMGLGAFPATHRQALGMLGMHGTYEANMTMHNADVIFAVGVRFDDRTTNNLAKYCPNATV 300 LMGLGAFP TH+ +LGMLGMHG YEANMTMHN D+IF +GVRFDDRTTNN+ KYCPNAT+ Sbjct: 241 LMGLGAFPGTHKNSLGMLGMHGRYEANMTMHNCDLIFGIGVRFDDRTTNNIEKYCPNATI 300 Query: 301 LHIDIDPTSISKTVTADIPIVGDARQVLEQMLELLSQESAHQPLDEIRDWWQQIEQWRAR 360 LHIDIDP+SISKTV DIPIVG A VL+ ML LL + + I WWQ+I WR R Sbjct: 301 LHIDIDPSSISKTVRVDIPIVGSADIVLDSMLALLEESKESNDSEAINQWWQEITVWRNR 360 Query: 361 QCLKYDTHSEKIKPQAVIETLWRLTKGDAYVTSDVGQHQMFAALYYPFDKPRRWINSGGL 420 CL YD S +IKPQ VIETL++LT G+AYV SDVGQHQMFAALYYPFDKPR WINSGGL Sbjct: 361 NCLAYDKESNRIKPQQVIETLYKLTNGEAYVASDVGQHQMFAALYYPFDKPRHWINSGGL 420 Query: 421 GTMGFGLPAALGVKMALPEETVVCVTGDGSIQMNIQELSTALQYELPVLVVNLNNRYLGM 480 GTMGFGLPAA+GVKMA+P+ETVVCVTGDGSIQMNIQELSTALQY+ PV ++NLNNR+LGM Sbjct: 421 GTMGFGLPAAMGVKMAMPDETVVCVTGDGSIQMNIQELSTALQYDTPVKIINLNNRFLGM 480 Query: 481 VKQWQDMIYSGRHSQSYMQSLPDFVRLAEAYGHVGIQISHPHELESKLSEALEQVRNNRL 540 VKQWQDMIYSGRHS SYM S+P+F ++AEAYGHVG+ IS P ELESK++EAL +RL Sbjct: 481 VKQWQDMIYSGRHSHSYMDSVPNFAKIAEAYGHVGMTISDPAELESKMAEAL--AMKDRL 538 Query: 541 VFVDVTVDGSEHVYPMQIRGGGMDEMWLSKTER 573 VF+D+ VD +EHVYPM IRGG M+EMWLSKTE+ Sbjct: 539 VFIDIMVDETEHVYPMLIRGGAMNEMWLSKTEK 571 Lambda K H 0.319 0.135 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 1083 Number of extensions: 29 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 574 Length of database: 572 Length adjustment: 36 Effective length of query: 538 Effective length of database: 536 Effective search space: 288368 Effective search space used: 288368 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 53 (25.0 bits)
Align candidate 7025106 Shewana3_2269 (acetolactate synthase 3 catalytic subunit (RefSeq))
to HMM TIGR00118 (ilvB: acetolactate synthase, large subunit, biosynthetic type (EC 2.2.1.6))
../bin/blast/fastacmd -i /tmp/list.23982.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.23982.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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