Align Aspartate kinase; Aspartokinase; EC 2.7.2.4 (characterized)
to candidate 7023909 Shewana3_1129 aspartate kinase (RefSeq)
Query= SwissProt::Q88EI9 (411 letters) >FitnessBrowser__ANA3:7023909 Length = 418 Score = 338 bits (867), Expect = 2e-97 Identities = 195/405 (48%), Positives = 273/405 (67%), Gaps = 3/405 (0%) Query: 3 LIVQKFGGTSVGSIERIEQVAEKVKKHREAGDDLVVVLSAMSGETNRLIDLAKQITDQPV 62 L V+KFGGTSVGSIERIE VAE++ K G+ V+VLSAM+GETNRL LA QI + Sbjct: 12 LFVKKFGGTSVGSIERIEVVAEQIAKSAHNGELQVLVLSAMAGETNRLFALAAQIDPRAS 71 Query: 63 PRELDVIVSTGEQVTIALLTMALIKRGVPAVSYTGNQVRILTDSSHNKARILQIDDQKIR 122 RELD++VSTGEQ++IAL+ MAL +RG+ A S TG+QV+I T+S +A I ++D + Sbjct: 72 ARELDMLVSTGEQISIALMAMALQRRGINARSLTGDQVQIHTNSQFGRASIERVDTAYLT 131 Query: 123 ADLKEGRVVVVAGFQGVDEHGSITTLGRGGSDTTGVALAAALKADECQIYTDVDGVYTTD 182 + L +G V +VAGFQG+D +G +TTLGRGGSDTT VALAAALKADECQI+TDV GV+TTD Sbjct: 132 SLLNDGIVPIVAGFQGIDPNGDVTTLGRGGSDTTAVALAAALKADECQIFTDVPGVFTTD 191 Query: 183 PRVVPQARRLEKITFEEMLEMASLGSKVLQIRSVEFAGKYNVPLRVLHSFKEGPGTLITI 242 P + ARRL+ I F+ MLEMA LG+KVL SVE+A ++ VPLRVL SF+ G GTLI Sbjct: 192 PNIDSSARRLDVIGFDVMLEMAKLGAKVLHPDSVEYAQRFKVPLRVLSSFEAGHGTLIQF 251 Query: 243 -DEEESMEQPIISGIAFNRDEAKLTIRGVPDTPGVAFKILGPISASNIEVDMIVQNVAHD 301 DE E + GIA N+ A LTI+G+ + +L ++ I+V+ I ++ Sbjct: 252 GDESELAMAASVQGIAINKALATLTIKGLFTSSEHYQALLACLARLEIDVEFITPLKLNE 311 Query: 302 NTTD--FTFTVHRNEYEKAQSVLENTAREIGAREVIGDTKIAKVSIVGVGMRSHAGVASC 359 + +F + + + LE + + ++I + + AKVS+VG G+++ G+ + Sbjct: 312 TSAAECVSFMLAEAKVDILLHELELLSESLDLGQLIVERQRAKVSLVGKGLQAKVGLLTK 371 Query: 360 MFEALAKESINIQMISTSEIKVSVVLEEKYLELAVRALHTAFDLD 404 M + L E+I+ +++STSE K+S V++E+ L AVRALH AF+L+ Sbjct: 372 MLDVLGNETIHAKLLSTSESKLSTVIDERDLHKAVRALHHAFELN 416 Lambda K H 0.316 0.133 0.358 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 421 Number of extensions: 10 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 411 Length of database: 418 Length adjustment: 31 Effective length of query: 380 Effective length of database: 387 Effective search space: 147060 Effective search space used: 147060 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 50 (23.9 bits)
Align candidate 7023909 Shewana3_1129 (aspartate kinase (RefSeq))
to HMM TIGR00657 (aspartate kinase (EC 2.7.2.4))
../bin/blast/fastacmd -i /tmp/list.15024.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.15024.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.