Align aspartate kinase (EC 2.7.2.4) (characterized)
to candidate 7023422 Shewana3_0652 aspartate kinase III (RefSeq)
Query= BRENDA::P08660 (449 letters) >FitnessBrowser__ANA3:7023422 Length = 451 Score = 517 bits (1331), Expect = e-151 Identities = 272/447 (60%), Positives = 339/447 (75%), Gaps = 1/447 (0%) Query: 4 IVVSKFGGTSVADFDAMNRSADIVLSDANVRLVVLSASAGITNLLVALA-EGLEPGERFE 62 +VV+KFGGTSVAD+ AMNR ADIVL + + RLVV+SAS+G+TNLLV L E + R + Sbjct: 3 LVVAKFGGTSVADYGAMNRCADIVLGNPDCRLVVVSASSGVTNLLVELTQESMNDDGRLQ 62 Query: 63 KLDAIRNIQFAILERLRYPNVIREEIERLLENITVLAEAAALATSPALTDELVSHGELMS 122 +L I IQ+AIL++L PN + +++LL + VL+EA A S A DEL+S GE S Sbjct: 63 RLKQIAQIQYAILDKLGRPNDVAAALDKLLSRMAVLSEALASQRSKATMDELLSLGEQCS 122 Query: 123 TLLFVEILRERDVQAQWFDVRKVMRTNDRFGRAEPDIAALAELAALQLLPRLNEGLVITQ 182 + LF +LRE+ + FDVR+V+RT+ FGRAEP + +A L+ LLP L+E +++TQ Sbjct: 123 SALFAAVLREKGANSSAFDVRRVLRTDSHFGRAEPQVEQIAILSREHLLPLLSEQVIVTQ 182 Query: 183 GFIGSENKGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIYTTDPRVVSAAKRIDE 242 GFIGS+ G+TTTLGRGGSDY+AALLAEAL AS V+IWTDV GIYTTDPR+ A I E Sbjct: 183 GFIGSDEAGQTTTLGRGGSDYSAALLAEALKASAVEIWTDVAGIYTTDPRLAPNAHPIAE 242 Query: 243 IAFAEAAEMATFGAKVLHPATLLPAVRSDIPVFVGSSKDPRAGGTLVCNKTENPPLFRAL 302 I+F EAAEMATFGAKVLHPAT+LPAVR I VFVGSSK+P GGT + ++ E+ P+FRA+ Sbjct: 243 ISFNEAAEMATFGAKVLHPATILPAVRQQIQVFVGSSKEPEKGGTWIRHQVEDAPVFRAV 302 Query: 303 ALRRNQTLLTLHSLNMLHSRGFLAEVFGILARHNISVDLITTSEVSVALTLDTTGSTSTG 362 ALRR+QTLL LHSL MLH++GFLAE F LARH ISVDLITTSEV+V+LTLD TGS S+G Sbjct: 303 ALRRDQTLLNLHSLQMLHAQGFLAETFATLARHKISVDLITTSEVNVSLTLDKTGSDSSG 362 Query: 363 DTLLTQSLLMELSALCRVEVEEGLALVALIGNDLSKACGVGKEVFGVLEPFNIRMICYGA 422 LL+++LL ELS CRV VE+GLALVA+IGN ++ G+ + VF VLEP N+RMIC GA Sbjct: 363 QGLLSEALLQELSQHCRVRVEDGLALVAIIGNRIATTAGICRRVFEVLEPHNVRMICQGA 422 Query: 423 SSHNLCFLVPGEDAEQVVQKLHSNLFE 449 S HNLC LV +A QVV+ LH NLFE Sbjct: 423 SPHNLCVLVAESEAAQVVKALHENLFE 449 Lambda K H 0.320 0.135 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 506 Number of extensions: 9 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 449 Length of database: 451 Length adjustment: 33 Effective length of query: 416 Effective length of database: 418 Effective search space: 173888 Effective search space used: 173888 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 51 (24.3 bits)
Align candidate 7023422 Shewana3_0652 (aspartate kinase III (RefSeq))
to HMM TIGR00656 (aspartate kinase, monofunctional class (EC 2.7.2.4))
../bin/blast/fastacmd -i /tmp/list.27001.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.27001.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.