Align Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 (characterized)
to candidate BPHYT_RS17930 BPHYT_RS17930 diaminopimelate decarboxylase
Query= SwissProt::B4XMC6 (405 letters) >FitnessBrowser__BFirm:BPHYT_RS17930 Length = 420 Score = 292 bits (748), Expect = 1e-83 Identities = 160/388 (41%), Positives = 240/388 (61%), Gaps = 9/388 (2%) Query: 13 TPFYLYDFDKIKQAFLNYKEAFKGRKSLICYALKANSNLSILSLLAHLESGADCVSIGEI 72 TP Y+Y + +A+ Y A GR++ + A+KANSNL++L++ A L +G D VS GE+ Sbjct: 29 TPLYVYSRAALTEAWNAYAGACAGRRASVHVAVKANSNLAVLNVFARLGAGFDIVSGGEL 88 Query: 73 QRALKAGIKPYRIVFSGVGKSAFEIEQALKLNILFLNVESFMELKTIETIAQSLGIKARI 132 R L AG + VFSGVGK A E+ AL + NVES EL + +A ++G KA + Sbjct: 89 ARVLAAGGRAENTVFSGVGKHADEMRDALAAGVKCFNVESIPELDRLNAVAAAMGKKAPV 148 Query: 133 SIRINPNIDAKTHPYISTGLKENKFGVGEKEALEMFLWAKKSAFLEPVSVHFHIGSQLLD 192 S+R+NP++DAKTHPYISTGLK NKFGV ++A + A A LE V + HIGSQ+ + Sbjct: 149 SLRVNPDVDAKTHPYISTGLKSNKFGVAFEDARATYQAAAAMANLEVVGIDCHIGSQITE 208 Query: 193 LEPIIEASQKVAKIAKSLIALGIDLRFFDVGGGIGVSYENEETIKLYDYAQGILNALQGL 252 + P ++A KV ++ + + G+ +R DVGGG+G++Y++E ++ ++ + +L+ ++ Sbjct: 209 VAPYLDAVDKVLELVEQIEQDGVKIRHIDVGGGLGITYDDETPPEIGEFVRTVLDRIEAR 268 Query: 253 ---DLTIICEPGRSIVAESGELITQVLYEKKAQNKRFVIVDAGMNDFLRPSLYHAKHAIR 309 + EPGRS+V +G L+T+V + K K F IVDA M D RP++Y A HA Sbjct: 269 GHGHREVYFEPGRSLVGNAGMLLTRVEFLKPGAEKNFAIVDAAMTDLARPAMYEAYHA-- 326 Query: 310 VITPSKGREISP--CDVVGPVCESSDTFLKDAHLPELEPGDKIAIEKVGAYGSSMASQYN 367 I P R++ DVVGPVCES D +L L +EPGD +AI GAYG M+S YN Sbjct: 327 -IDPVVKRDVPAHVYDVVGPVCESGD-WLGRERLLSVEPGDLLAIRSAGAYGFVMSSNYN 384 Query: 368 SRPKLLELALEDHKIRVIRKREALEDLW 395 +RP+ E+ ++ ++ V+R RE ++ L+ Sbjct: 385 TRPRAAEVMVDGTQVHVVRAREEVKQLF 412 Lambda K H 0.319 0.138 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 380 Number of extensions: 14 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 405 Length of database: 420 Length adjustment: 31 Effective length of query: 374 Effective length of database: 389 Effective search space: 145486 Effective search space used: 145486 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.9 bits)
Align candidate BPHYT_RS17930 BPHYT_RS17930 (diaminopimelate decarboxylase)
to HMM TIGR01048 (lysA: diaminopimelate decarboxylase (EC 4.1.1.20))
../bin/blast/fastacmd -i /tmp/list.10392.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.10392.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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