GapMind for Amino acid biosynthesis

 

Alignments for a candidate for hisI in Bacteroides thetaiotaomicron VPI-5482

Align putative bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase (EC 3.5.4.19; EC 3.6.1.31) (characterized)
to candidate 350905 BT1377 phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphohydrolase (NCBI ptt file)

Query= ecocyc::HISTCYCLOPRATPPHOS
         (203 letters)



>FitnessBrowser__Btheta:350905
          Length = 203

 Score =  207 bits (528), Expect = 8e-59
 Identities = 103/195 (52%), Positives = 137/195 (70%), Gaps = 1/195 (0%)

Query: 9   ELDWEKTDGLMPVIVQHAVSGEVLMLGYMNPEALDKTLESGKVTFFSRTKQRLWTKGETS 68
           ELD++K +GL+P I+Q   + +VLMLG+MN EA DKT+E+GKVTFFSRTK RLWTKGE S
Sbjct: 2   ELDFDKMNGLVPAIIQDNETRKVLMLGFMNKEAYDKTVETGKVTFFSRTKNRLWTKGEES 61

Query: 69  GNFLNVVSIAPDCDNDTLLVLANPIGPTCHKGTSSCFGDTAHQ-WLFLYQLEQLLAERKS 127
           GNFL+VVSI  DCDNDTLL+ A+P GP CH GT +C+G+   +  +FL  L+  + +R  
Sbjct: 62  GNFLHVVSIKADCDNDTLLIQADPAGPVCHTGTDTCWGEKNEEPVMFLKALQDFIDKRHE 121

Query: 128 ADPETSYTAKLYASGTKRIAQKVGEEGVETALAATVHDRFELTNEASDLMYHLLVLLQDQ 187
             P+ SYT  L+ SG  +IAQKVGEE VET + AT      L  E +DL+YH++VLL  +
Sbjct: 122 EMPQGSYTTSLFESGINKIAQKVGEEAVETVIEATNGTNERLIYEGADLIYHMIVLLTSK 181

Query: 188 GLDLTTVIENLRKRH 202
           G  +  +   L++RH
Sbjct: 182 GYRIEDLARELQERH 196


Lambda     K      H
   0.317    0.132    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 130
Number of extensions: 4
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 203
Length of database: 203
Length adjustment: 21
Effective length of query: 182
Effective length of database: 182
Effective search space:    33124
Effective search space used:    33124
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)

Align candidate 350905 BT1377 (phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphohydrolase (NCBI ptt file))
to HMM TIGR03188 (hisE: phosphoribosyl-ATP diphosphatase (EC 3.6.1.31))

Software error:

../bin/blast/fastacmd -i /tmp/list.7094.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.7094.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.