GapMind for Amino acid biosynthesis

 

Alignments for a candidate for asp-kinase in Bacteroides thetaiotaomicron VPI-5482

Align Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic; AK-HD 2; AK-HSDH 2; Beta-aspartyl phosphate homoserine 2; EC 2.7.2.4; EC 1.1.1.3 (characterized)
to candidate 351931 BT2403 aspartokinase/homoserine dehydrogenase (NCBI ptt file)

Query= SwissProt::O81852
         (916 letters)



>FitnessBrowser__Btheta:351931
          Length = 811

 Score =  495 bits (1275), Expect = e-144
 Identities = 301/824 (36%), Positives = 461/824 (55%), Gaps = 20/824 (2%)

Query: 91  VHKFGGTCVGNSQRIRNVAEVIINDNSERKLVVVSAMSKVTDMMYDLIRKAQSRDDSYLS 150
           V KFGGT VG+   I +V   I+    E  +VVVSA+  +TD + +  + A + D +Y  
Sbjct: 3   VMKFGGTSVGSVNSILSVKR-IVESAGEPVIVVVSALGGITDKLINTSKMAAAGDSAYEG 61

Query: 151 ALEAVLEKHRLTARDLLD-GDDLASFLSHLHNDISNLKAMLRAIYIAGHASESFSDFVAG 209
               ++ +H    ++++  G    +    +   ++ LK + + IY+    S   SD +  
Sbjct: 62  EFREIVYRHVEMIKEVIPAGAGQVALQRQIGELLNELKDIFQGIYLIRDLSPKTSDTIVS 121

Query: 210 HGELWSAQMLSYVVRKTGLECKWMDTRDVLIVNPTSSNQVDPDFGESEKRLDKWFSLNPS 269
           +GE    ++ S +V +   E KW D+R   I      N+   D   + + + + F   P 
Sbjct: 122 YGE----RLSSIIVAELIDEAKWFDSR-TFIKTEKKHNKHTIDADLTNQLVKEAFHSIP- 175

Query: 270 KIIIATGFIASTP-QNIPTTLKRDGSDFSAAIMGALLRARQVTIWTDVDGVYSADPRKVN 328
           K+ +  GFI+S       T L R GSD++AAI+ A L A  + IWTDVDG  +ADPR ++
Sbjct: 176 KVSLVPGFISSDKVSGDVTNLGRGGSDYTAAIIAAALDASSLEIWTDVDGFMTADPRVIS 235

Query: 329 EAVILQTLSYQEAWEMSYFGANVLHPRTIIPVMRYNIPIVIRNIFNLSAPGTIICQPPED 388
            A  +  LSY EA E+  FGA V++P TI PV   NIPI+I+N FN    GT+I Q   +
Sbjct: 236 TAYTISELSYVEATELCNFGAKVVYPPTIYPVCHKNIPIIIKNTFNPDGVGTVIKQETSN 295

Query: 389 DYDLKLTTPVKGFATIDNLALINVEGTGMAGVPGTASDIFGCVKDVGANVIMISQASSEH 448
                 +  +KG ++I++ +LI V+G GM GV G    IF  +   G +V ++SQASSE+
Sbjct: 296 PQ----SKAIKGISSINDTSLITVQGLGMVGVIGVNYRIFKALAKNGISVFLVSQASSEN 351

Query: 449 SVCFAVPEKEVNAVSEALRSRFSEALQAGRLSQIEVIPNCSILAAVGQKMASTPGVSCTL 508
           S    V   + +   E L   F++ ++ G +S I    N + +A VG+ M  TPG++  L
Sbjct: 352 STSIGVRNADADLACEVLNEEFAKEIEMGEISPILAERNLATVAIVGENMKHTPGIAGKL 411

Query: 509 FSALAKANINVRAISQGCSEYNVTVVIKREDSVKALRAVHSRFFLSR-TTLAMGIVGPGL 567
           F  L +  INV A +QG SE N++ V+  +   K+L  +H  FFLS    L + I G G 
Sbjct: 412 FGTLGRNGINVIACAQGASETNISFVVDSKSLRKSLNVIHDSFFLSEYQVLNLFICGIGT 471

Query: 568 IGATLLDQLRDQAAVLKQEFNIDLRVLGITGSKKMLLSDIGIDLSRWRELLNEKGTEADL 627
           +G +L++Q+R Q   L  E  + L V+GI  + K + S  G DL+ +RE L +KG +++L
Sbjct: 472 VGGSLVEQIRCQQQKLMMENGLKLHVVGIIDAAKAMFSREGFDLANFREELQKKGKDSNL 531

Query: 628 DKFTQQVHGNHFIPNSVVVDCTADSAIASRYYDWLRKGIHVITPNKKANSGPLDQYLKLR 687
                ++ G +   NSV VDCTA   IAS Y D L+  + V+  NK A S   + Y +L+
Sbjct: 532 QTIRDEIVGMNIF-NSVFVDCTASPDIASLYKDLLQHNVSVVAANKIAASSAYENYRELK 590

Query: 688 DLQRKSYTHYFYEATVGAGLPIISTLRGLLETGDKILRIEGICSGTLSYLFNNFVGDRSF 747
            + R+    Y +E  VGAGLPII+T+  L+ +GDKIL+IE + SGTL+Y+FN    D  F
Sbjct: 591 TIARQRGVKYLFETNVGAGLPIINTINDLIHSGDKILKIEAVLSGTLNYIFNKISADIPF 650

Query: 748 SEVVTEAKNAGFTEPDPRDDLSGTDVARKVIILARESGLKLDLADLPIRSLVPEP-LKGC 806
           S  +  A+   ++EPDPR DLSG DV RK++ILARE+G  ++  D+     VP    +G 
Sbjct: 651 SRTIKMAQEERYSEPDPRIDLSGKDVIRKLVILAREAGYHIEQEDVEKNLFVPNDFFEG- 709

Query: 807 TSVEEFMEKLPQYDGDLAKERLDAENSGEVLRYVGVVDAVNQKGTVELRRYKKEHPFAQL 866
            S+++F +++P  D D    R   E   +  R+V  ++  + K +V L+     HPF  L
Sbjct: 710 -SLDDFWKRVPSLDADFEARRQVLEKEHKHWRFVAKLE--DGKASVGLQEVGANHPFYGL 766

Query: 867 AGSDNIIAFTTTRYKDHPLIVRGPGAGAQVTAGGIFSDILRLAS 910
            GS+NII  TT RYK++P++++G GAGA VTA G+F+DI+ +A+
Sbjct: 767 EGSNNIILLTTERYKEYPMMIQGYGAGAGVTAAGVFADIMSIAN 810


Lambda     K      H
   0.319    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1456
Number of extensions: 72
Number of successful extensions: 11
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 916
Length of database: 811
Length adjustment: 42
Effective length of query: 874
Effective length of database: 769
Effective search space:   672106
Effective search space used:   672106
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)

Align candidate 351931 BT2403 (aspartokinase/homoserine dehydrogenase (NCBI ptt file))
to HMM TIGR00657 (aspartate kinase (EC 2.7.2.4))

Software error:

../bin/blast/fastacmd -i /tmp/list.9506.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.9506.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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