Align Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic; AK-HD 2; AK-HSDH 2; Beta-aspartyl phosphate homoserine 2; EC 2.7.2.4; EC 1.1.1.3 (characterized)
to candidate 351931 BT2403 aspartokinase/homoserine dehydrogenase (NCBI ptt file)
Query= SwissProt::O81852 (916 letters) >FitnessBrowser__Btheta:351931 Length = 811 Score = 495 bits (1275), Expect = e-144 Identities = 301/824 (36%), Positives = 461/824 (55%), Gaps = 20/824 (2%) Query: 91 VHKFGGTCVGNSQRIRNVAEVIINDNSERKLVVVSAMSKVTDMMYDLIRKAQSRDDSYLS 150 V KFGGT VG+ I +V I+ E +VVVSA+ +TD + + + A + D +Y Sbjct: 3 VMKFGGTSVGSVNSILSVKR-IVESAGEPVIVVVSALGGITDKLINTSKMAAAGDSAYEG 61 Query: 151 ALEAVLEKHRLTARDLLD-GDDLASFLSHLHNDISNLKAMLRAIYIAGHASESFSDFVAG 209 ++ +H ++++ G + + ++ LK + + IY+ S SD + Sbjct: 62 EFREIVYRHVEMIKEVIPAGAGQVALQRQIGELLNELKDIFQGIYLIRDLSPKTSDTIVS 121 Query: 210 HGELWSAQMLSYVVRKTGLECKWMDTRDVLIVNPTSSNQVDPDFGESEKRLDKWFSLNPS 269 +GE ++ S +V + E KW D+R I N+ D + + + + F P Sbjct: 122 YGE----RLSSIIVAELIDEAKWFDSR-TFIKTEKKHNKHTIDADLTNQLVKEAFHSIP- 175 Query: 270 KIIIATGFIASTP-QNIPTTLKRDGSDFSAAIMGALLRARQVTIWTDVDGVYSADPRKVN 328 K+ + GFI+S T L R GSD++AAI+ A L A + IWTDVDG +ADPR ++ Sbjct: 176 KVSLVPGFISSDKVSGDVTNLGRGGSDYTAAIIAAALDASSLEIWTDVDGFMTADPRVIS 235 Query: 329 EAVILQTLSYQEAWEMSYFGANVLHPRTIIPVMRYNIPIVIRNIFNLSAPGTIICQPPED 388 A + LSY EA E+ FGA V++P TI PV NIPI+I+N FN GT+I Q + Sbjct: 236 TAYTISELSYVEATELCNFGAKVVYPPTIYPVCHKNIPIIIKNTFNPDGVGTVIKQETSN 295 Query: 389 DYDLKLTTPVKGFATIDNLALINVEGTGMAGVPGTASDIFGCVKDVGANVIMISQASSEH 448 + +KG ++I++ +LI V+G GM GV G IF + G +V ++SQASSE+ Sbjct: 296 PQ----SKAIKGISSINDTSLITVQGLGMVGVIGVNYRIFKALAKNGISVFLVSQASSEN 351 Query: 449 SVCFAVPEKEVNAVSEALRSRFSEALQAGRLSQIEVIPNCSILAAVGQKMASTPGVSCTL 508 S V + + E L F++ ++ G +S I N + +A VG+ M TPG++ L Sbjct: 352 STSIGVRNADADLACEVLNEEFAKEIEMGEISPILAERNLATVAIVGENMKHTPGIAGKL 411 Query: 509 FSALAKANINVRAISQGCSEYNVTVVIKREDSVKALRAVHSRFFLSR-TTLAMGIVGPGL 567 F L + INV A +QG SE N++ V+ + K+L +H FFLS L + I G G Sbjct: 412 FGTLGRNGINVIACAQGASETNISFVVDSKSLRKSLNVIHDSFFLSEYQVLNLFICGIGT 471 Query: 568 IGATLLDQLRDQAAVLKQEFNIDLRVLGITGSKKMLLSDIGIDLSRWRELLNEKGTEADL 627 +G +L++Q+R Q L E + L V+GI + K + S G DL+ +RE L +KG +++L Sbjct: 472 VGGSLVEQIRCQQQKLMMENGLKLHVVGIIDAAKAMFSREGFDLANFREELQKKGKDSNL 531 Query: 628 DKFTQQVHGNHFIPNSVVVDCTADSAIASRYYDWLRKGIHVITPNKKANSGPLDQYLKLR 687 ++ G + NSV VDCTA IAS Y D L+ + V+ NK A S + Y +L+ Sbjct: 532 QTIRDEIVGMNIF-NSVFVDCTASPDIASLYKDLLQHNVSVVAANKIAASSAYENYRELK 590 Query: 688 DLQRKSYTHYFYEATVGAGLPIISTLRGLLETGDKILRIEGICSGTLSYLFNNFVGDRSF 747 + R+ Y +E VGAGLPII+T+ L+ +GDKIL+IE + SGTL+Y+FN D F Sbjct: 591 TIARQRGVKYLFETNVGAGLPIINTINDLIHSGDKILKIEAVLSGTLNYIFNKISADIPF 650 Query: 748 SEVVTEAKNAGFTEPDPRDDLSGTDVARKVIILARESGLKLDLADLPIRSLVPEP-LKGC 806 S + A+ ++EPDPR DLSG DV RK++ILARE+G ++ D+ VP +G Sbjct: 651 SRTIKMAQEERYSEPDPRIDLSGKDVIRKLVILAREAGYHIEQEDVEKNLFVPNDFFEG- 709 Query: 807 TSVEEFMEKLPQYDGDLAKERLDAENSGEVLRYVGVVDAVNQKGTVELRRYKKEHPFAQL 866 S+++F +++P D D R E + R+V ++ + K +V L+ HPF L Sbjct: 710 -SLDDFWKRVPSLDADFEARRQVLEKEHKHWRFVAKLE--DGKASVGLQEVGANHPFYGL 766 Query: 867 AGSDNIIAFTTTRYKDHPLIVRGPGAGAQVTAGGIFSDILRLAS 910 GS+NII TT RYK++P++++G GAGA VTA G+F+DI+ +A+ Sbjct: 767 EGSNNIILLTTERYKEYPMMIQGYGAGAGVTAAGVFADIMSIAN 810 Lambda K H 0.319 0.135 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 1456 Number of extensions: 72 Number of successful extensions: 11 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 916 Length of database: 811 Length adjustment: 42 Effective length of query: 874 Effective length of database: 769 Effective search space: 672106 Effective search space used: 672106 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 56 (26.2 bits)
Align candidate 351931 BT2403 (aspartokinase/homoserine dehydrogenase (NCBI ptt file))
to HMM TIGR00657 (aspartate kinase (EC 2.7.2.4))
../bin/blast/fastacmd -i /tmp/list.21234.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.21234.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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