Align Carbamoyl-phosphate synthase small chain, chloroplastic; Carbamoyl-phosphate synthetase glutamine chain; Protein VENOSA 6; EC 6.3.5.5 (characterized)
to candidate CCNA_02925 CCNA_02925 carbamoyl-phosphate synthase small chain
Query= SwissProt::Q9LVW7 (430 letters) >FitnessBrowser__Caulo:CCNA_02925 Length = 388 Score = 300 bits (768), Expect = 5e-86 Identities = 162/377 (42%), Positives = 227/377 (60%), Gaps = 10/377 (2%) Query: 60 LVLEDGSIWPAKSFGAPGTRIAELVFNTSLTGYQEILTDPSYAGQFVLMTNPQIGNTGVN 119 L L DG+I GA G + E+ FNT++TGYQEILTDPSY Q V T P +GN GVN Sbjct: 13 LALADGAILQGVGCGAVGDAVGEVCFNTAMTGYQEILTDPSYMAQIVAFTFPHVGNVGVN 72 Query: 120 PDDEES----GQCFLTGLVIRNLSISTSNWRCTKTLADYLTERDIMGVYDLDTRAITRRL 175 +D E + G + R++ +NWR ++ R ++G+ +DTRA+TR++ Sbjct: 73 GEDVEQITGVAETAARGALFRDVPTVQANWRADGDFDAWMKARGVVGLAGVDTRALTRKI 132 Query: 176 REDGSLIGVLSTEQSKTDD--ELLQMSRSW-DIVGIDLISDVSCKSPYEWVDKTNAEWDF 232 RE G GV++ D L+ +++W + G+DL D S + W D+ W Sbjct: 133 RETGMPHGVIAHSPDGQFDLAALVAKAKAWAGLEGLDLAKDASTTQTFTW-DEGLWSWPE 191 Query: 233 NTNSRDGKSYKVIAYDFGIKQNILRRLSSYGCQITVVPSTFPAAEALKMNPDGILFSNGP 292 D Y+V+ D+G+K+NILR L+ G + TVVP++ A + L NPDG++ SNGP Sbjct: 192 GYAKLDKPKYEVVVIDYGVKRNILRALAHVGARATVVPASTSAEDILARNPDGVMLSNGP 251 Query: 293 GDPSAV-PYAVETVKELLGK-VPVYGICMGHQLLGQALGGKTFKMKFGHHGGNHPVRNNR 350 GDP+A YAV +++L+ PV+GIC+GHQ+L ALG KT KM+ GHHG NHPV++ Sbjct: 252 GDPAATGQYAVPEIQKLVASGKPVFGICLGHQMLALALGAKTVKMEQGHHGANHPVKDLT 311 Query: 351 TGQVEISAQNHNYAVDPASLPGGVEVTHVNLNDGSCAGLSFPEMNVMSLQYHPEASPGPH 410 TG+VEI + NH + VD ASLP V+ THV+L DG+ AG++ V S+Q+HPEASPGP Sbjct: 312 TGKVEIVSMNHGFTVDTASLPAPVKETHVSLFDGTNAGIALDGKPVFSVQHHPEASPGPT 371 Query: 411 DSDNAFREFIELMKRSK 427 DS F F LM +K Sbjct: 372 DSLYLFERFAGLMDAAK 388 Lambda K H 0.316 0.134 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 480 Number of extensions: 27 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 430 Length of database: 388 Length adjustment: 31 Effective length of query: 399 Effective length of database: 357 Effective search space: 142443 Effective search space used: 142443 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 50 (23.9 bits)
Align candidate CCNA_02925 CCNA_02925 (carbamoyl-phosphate synthase small chain)
to HMM TIGR01368 (carA: carbamoyl-phosphate synthase, small subunit (EC 6.3.5.5))
../bin/blast/fastacmd -i /tmp/list.14608.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.14608.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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