Align aspartate kinase (EC 2.7.2.4) (characterized)
to candidate Echvi_1827 Echvi_1827 aspartate kinase
Query= BRENDA::P08660 (449 letters) >FitnessBrowser__Cola:Echvi_1827 Length = 423 Score = 172 bits (435), Expect = 2e-47 Identities = 123/404 (30%), Positives = 201/404 (49%), Gaps = 20/404 (4%) Query: 1 MSEIVVSKFGGTSVADFDAMNRSADIVLSDANVRLVVLSASAGITNLLVALAEGLEPGER 60 M++ +V KFGG SV D A+ ++I+ + +V++ ++ G T AL E L + Sbjct: 1 MTKAIVYKFGGASVKDAAAIKNLSNILFNRLRSPMVIVVSAIGKTTN--ALEEILRL--K 56 Query: 61 FEKLDAIRNIQFAILERLRYPNVIREE---IERLLENITV-LAEAAALATSPALTDE--- 113 ++ +D NI L + EE + ++ENI + LA + + DE Sbjct: 57 YDGVDFYSNITILRKNHLAICQELFEEGDLVFGMVENIFLQLARVLEVPLTKENYDEYYD 116 Query: 114 -LVSHGELMSTLLFVEILRERDVQAQWFDVRKVMRTNDRFGRAEPDIAALAELAALQLLP 172 +V GEL+ST + L R W D R + T+D F A+ D A +L+P Sbjct: 117 RVVGFGELLSTKIIHAYLCHRQQYCIWQDARDFILTDDNFRFAKVDWEQTARQCQQKLVP 176 Query: 173 RLNEGLVITQGFIGSENKGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIYTTDPR 232 L + V+TQGF+GS G+ TTLGR GSD++AA+ A++L A V IW DVPG+ DP+ Sbjct: 177 VLKQLPVVTQGFVGSTKDGQPTTLGREGSDFSAAIFAKSLGAESVTIWKDVPGVLNADPK 236 Query: 233 VVSAAKRIDEIAFAEAAEMATFGAKVLHPATLLPAVRSDIPVFVGSSKDPRAGGTLVCNK 292 + D + + EAAEM +GA V+HP T+ P + IP+FV S P GT++ + Sbjct: 237 RFEETVKFDRLDYKEAAEMTFYGASVIHPRTIKPLANAKIPLFVRSFLQPEEQGTVIGDF 296 Query: 293 TENPPLFRALALRRNQTLLTLHSLNMLH-SRGFLAEVFGILARHNISVDLITTSEVSVAL 351 E + ++ Q L+T + + + +V+ L R + +LI +S +++++ Sbjct: 297 GEGSINVPTIVVKDRQVLVTFEVTDFTFINESHMHQVYAELDRLKLRANLIQSSAITISI 356 Query: 352 TLDTTGSTSTGDTLLTQSLLMELSALCRVEVEEGLALVALIGND 395 D + + LL E+ + +V+ EGL LV + D Sbjct: 357 CTDR-------ELFKLEQLLEEMKGIFKVKYNEGLQLVTVKNYD 393 Lambda K H 0.320 0.135 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 322 Number of extensions: 10 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 449 Length of database: 423 Length adjustment: 32 Effective length of query: 417 Effective length of database: 391 Effective search space: 163047 Effective search space used: 163047 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 51 (24.3 bits)
Align candidate Echvi_1827 Echvi_1827 (aspartate kinase)
to HMM TIGR00657 (aspartate kinase (EC 2.7.2.4))
../bin/blast/fastacmd -i /tmp/list.9344.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.9344.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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