GapMind for Amino acid biosynthesis

 

Alignments for a candidate for asp-kinase in Echinicola vietnamensis KMM 6221, DSM 17526

Align aspartate kinase (EC 2.7.2.4) (characterized)
to candidate Echvi_1827 Echvi_1827 aspartate kinase

Query= BRENDA::P08660
         (449 letters)



>FitnessBrowser__Cola:Echvi_1827
          Length = 423

 Score =  172 bits (435), Expect = 2e-47
 Identities = 123/404 (30%), Positives = 201/404 (49%), Gaps = 20/404 (4%)

Query: 1   MSEIVVSKFGGTSVADFDAMNRSADIVLSDANVRLVVLSASAGITNLLVALAEGLEPGER 60
           M++ +V KFGG SV D  A+   ++I+ +     +V++ ++ G T    AL E L    +
Sbjct: 1   MTKAIVYKFGGASVKDAAAIKNLSNILFNRLRSPMVIVVSAIGKTTN--ALEEILRL--K 56

Query: 61  FEKLDAIRNIQFAILERLRYPNVIREE---IERLLENITV-LAEAAALATSPALTDE--- 113
           ++ +D   NI       L     + EE   +  ++ENI + LA    +  +    DE   
Sbjct: 57  YDGVDFYSNITILRKNHLAICQELFEEGDLVFGMVENIFLQLARVLEVPLTKENYDEYYD 116

Query: 114 -LVSHGELMSTLLFVEILRERDVQAQWFDVRKVMRTNDRFGRAEPDIAALAELAALQLLP 172
            +V  GEL+ST +    L  R     W D R  + T+D F  A+ D    A     +L+P
Sbjct: 117 RVVGFGELLSTKIIHAYLCHRQQYCIWQDARDFILTDDNFRFAKVDWEQTARQCQQKLVP 176

Query: 173 RLNEGLVITQGFIGSENKGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIYTTDPR 232
            L +  V+TQGF+GS   G+ TTLGR GSD++AA+ A++L A  V IW DVPG+   DP+
Sbjct: 177 VLKQLPVVTQGFVGSTKDGQPTTLGREGSDFSAAIFAKSLGAESVTIWKDVPGVLNADPK 236

Query: 233 VVSAAKRIDEIAFAEAAEMATFGAKVLHPATLLPAVRSDIPVFVGSSKDPRAGGTLVCNK 292
                 + D + + EAAEM  +GA V+HP T+ P   + IP+FV S   P   GT++ + 
Sbjct: 237 RFEETVKFDRLDYKEAAEMTFYGASVIHPRTIKPLANAKIPLFVRSFLQPEEQGTVIGDF 296

Query: 293 TENPPLFRALALRRNQTLLTLHSLNMLH-SRGFLAEVFGILARHNISVDLITTSEVSVAL 351
            E       + ++  Q L+T    +    +   + +V+  L R  +  +LI +S +++++
Sbjct: 297 GEGSINVPTIVVKDRQVLVTFEVTDFTFINESHMHQVYAELDRLKLRANLIQSSAITISI 356

Query: 352 TLDTTGSTSTGDTLLTQSLLMELSALCRVEVEEGLALVALIGND 395
             D        +    + LL E+  + +V+  EGL LV +   D
Sbjct: 357 CTDR-------ELFKLEQLLEEMKGIFKVKYNEGLQLVTVKNYD 393


Lambda     K      H
   0.320    0.135    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 322
Number of extensions: 10
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 423
Length adjustment: 32
Effective length of query: 417
Effective length of database: 391
Effective search space:   163047
Effective search space used:   163047
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)

Align candidate Echvi_1827 Echvi_1827 (aspartate kinase)
to HMM TIGR00657 (aspartate kinase (EC 2.7.2.4))

Software error:

../bin/blast/fastacmd -i /tmp/list.9344.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.9344.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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