GapMind for Amino acid biosynthesis

 

Alignments for a candidate for asp-kinase in Echinicola vietnamensis KMM 6221, DSM 17526

Align Bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic; AK-HD 1; AK-HSDH 1; Beta-aspartyl phosphate homoserine 1; EC 2.7.2.4; EC 1.1.1.3 (characterized)
to candidate Echvi_2000 Echvi_2000 aspartate kinase

Query= SwissProt::Q9SA18
         (911 letters)



>FitnessBrowser__Cola:Echvi_2000
          Length = 815

 Score =  579 bits (1493), Expect = e-169
 Identities = 325/821 (39%), Positives = 480/821 (58%), Gaps = 14/821 (1%)

Query: 88  KFGGTCVGNSERIKDVAAVVV-KDDSERKLVVVSAMSKVTDMMYDLIHRAESRDDSYLSA 146
           KFGG+ + N E I+ V +++  K + E   +V SA   VT+ +    + A+  ++SY + 
Sbjct: 5   KFGGSSIANYENIQKVFSIIEQKSEKEAFALVFSAFGGVTEQLLQCANIAQQSEESYHTI 64

Query: 147 LSGVLEKHRATAVDLLDGDELSSFLARLNDDINNLKAMLRAIYIAGHATESFSDFVVGHG 206
           L  + ++H      L+   + S+ L  +    N L  +   IY+    +    D+V+  G
Sbjct: 65  LQELEKRHLEIVKKLVPVQQQSTALTFVKVRFNELGDLFHGIYLIKECSNRTMDYVLSFG 124

Query: 207 ELWSAQMLAAVVRKSGLDCTWMDARDVLVVIPTSSNQVDPDFVESEKRLEKWFTQNSAKI 266
           E  S  +LAA ++  G+  +++DARD LV           +F  + K ++  F  +   I
Sbjct: 125 ERLSNFILAAGLQAKGIGTSYVDARD-LVKTDDRFGHAKVNFKTTNKLIQDHFKSHD-DI 182

Query: 267 IIATGFIASTPQNIPTTLKRDGSDFSAAIMSALFRSHQLTIWTDVDGVYSADPRKVSEAV 326
            + TGFI ST +   TT+ R GSD++A+I +A   + Q+ IWTDV GV +ADPR V  A 
Sbjct: 183 KVITGFIGSTEKGETTTVGRSGSDYTASIFAAALGAEQVEIWTDVSGVMTADPRLVYTAF 242

Query: 327 VLKTLSYQEAWEMSYFGANVLHPRTIIPVMKYDIPIVIRNIFNLSAPGTMICRQIDDEDG 386
            +  LSY EA E+S+FGA V+ P T+ P MK DIPI I+N F     GT I +  D  +G
Sbjct: 243 TIPQLSYNEAMELSHFGAKVVFPATMQPAMKEDIPIYIKNTFKPDEAGTRISK--DSGEG 300

Query: 387 FKLDAPVKGFATIDNLALVNVEGTGMAGVPGTASAIFSAVKEVGANVIMISQASSEHSVC 446
                 +KG +++DN++++NV+G G+  V G +   F  +   G N+I+ISQASSEHS+C
Sbjct: 301 ----KIIKGISSMDNISILNVQGPGLVEVVGVSQRFFGTLANNGINIILISQASSEHSIC 356

Query: 447 FAVPEKEVKAVSEALNSRFRQALAGGRLSQIEIIPNCSILAAVGQKMASTPGVSATFFNA 506
            A+  K+       +   FR  +  G + +I+I+P+ +++A VG+ M   PG S   F A
Sbjct: 357 VAIASKDASRAKSVIEEEFRYEIQSGEMDEIQIVPDMAVIAVVGENMQHNPGASGRMFQA 416

Query: 507 LAKANINIRAIAQGCSEFNITVVVKREDCIRALRAVHSRFYLSR-TTLAVGIIGPGLIGG 565
           L + N+N+ AIAQG SE NI+ V+ + D  +AL A+H  F+LS    L + ++G GLIG 
Sbjct: 417 LGRNNVNVAAIAQGSSELNISAVITQADLQKALNALHEAFFLSDYKVLHLFLVGVGLIGK 476

Query: 566 TLLDQIRDQAAVLKEEFKIDLRVIGITGSSKMLMSESGIDLSRWRELMKEEGEKADMEKF 625
            L   I  Q   L+EE  +D+++ G+  S  M   E G DL+       E  E  DM+KF
Sbjct: 477 ALTKMIHQQLKNLQEENMLDIQIHGMANSRYMKFHEDGFDLATVGP-PDENDEPMDMDKF 535

Query: 626 TQYVKGNHFIPNSVMVDCTADADIASCYYDWLLRGIHVVTPNKKANSGPLDQYLKIRDLQ 685
              +   +F  NSV VDCTA  D+A  Y   L   + +VTPNKKANSGPL+ Y K++ L 
Sbjct: 536 IGTMTEMNF-SNSVFVDCTASQDVADIYEQILDSKVGIVTPNKKANSGPLETYKKLKKLA 594

Query: 686 RKSYTHYFYEATVGAGLPIISTLRGLLETGDKILRIEGIFSGTLSYLFNNFVGTRSFSEV 745
            +    +FYE  V AGLP+I+TL+ L+ +GD + RIE + SG+++Y+F+       FSEV
Sbjct: 595 GQRGVRFFYETNVAAGLPVINTLQDLMLSGDHVHRIEAVLSGSMNYIFSELEKGMPFSEV 654

Query: 746 VAEAKQAGFTEPDPRDDLSGTDVARKVTILARESGLKLDLEGLPVQNLVPKPLQACASAE 805
           VA+AK+ G+TEPDPRDDLSG DVARK+ IL RE+G  L  E + +Q++VP+  +  AS  
Sbjct: 655 VAQAKEKGYTEPDPRDDLSGMDVARKILILGREAGQDLHFEDVEIQSMVPEDCEDAASVP 714

Query: 806 EFMEKLPQFDEELSKQREEAEAAGEVLRYVGVVDAVEKKGTVELKRYKKDHPFAQLSGAD 865
           EF +KL + D    +  +EA A GE LR++  ++    K  V L     +HPF  L G+D
Sbjct: 715 EFFKKLQKHDGHFQQLLDEANAKGEKLRFMATLE--NGKAKVGLNSLDSEHPFFTLKGSD 772

Query: 866 NIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLAFY 906
           N+I FTT+RY + P+IVRGPGAGA VTA G+F+DI+RL  Y
Sbjct: 773 NMILFTTERYNDFPMIVRGPGAGADVTAAGVFADIIRLGNY 813


Lambda     K      H
   0.319    0.134    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1447
Number of extensions: 59
Number of successful extensions: 8
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 911
Length of database: 815
Length adjustment: 42
Effective length of query: 869
Effective length of database: 773
Effective search space:   671737
Effective search space used:   671737
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)

Align candidate Echvi_2000 Echvi_2000 (aspartate kinase)
to HMM TIGR00657 (aspartate kinase (EC 2.7.2.4))

Software error:

../bin/blast/fastacmd -i /tmp/list.13009.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.13009.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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