Align Bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic; AK-HD 1; AK-HSDH 1; Beta-aspartyl phosphate homoserine 1; EC 2.7.2.4; EC 1.1.1.3 (characterized)
to candidate Echvi_2000 Echvi_2000 aspartate kinase
Query= SwissProt::Q9SA18 (911 letters) >FitnessBrowser__Cola:Echvi_2000 Length = 815 Score = 579 bits (1493), Expect = e-169 Identities = 325/821 (39%), Positives = 480/821 (58%), Gaps = 14/821 (1%) Query: 88 KFGGTCVGNSERIKDVAAVVV-KDDSERKLVVVSAMSKVTDMMYDLIHRAESRDDSYLSA 146 KFGG+ + N E I+ V +++ K + E +V SA VT+ + + A+ ++SY + Sbjct: 5 KFGGSSIANYENIQKVFSIIEQKSEKEAFALVFSAFGGVTEQLLQCANIAQQSEESYHTI 64 Query: 147 LSGVLEKHRATAVDLLDGDELSSFLARLNDDINNLKAMLRAIYIAGHATESFSDFVVGHG 206 L + ++H L+ + S+ L + N L + IY+ + D+V+ G Sbjct: 65 LQELEKRHLEIVKKLVPVQQQSTALTFVKVRFNELGDLFHGIYLIKECSNRTMDYVLSFG 124 Query: 207 ELWSAQMLAAVVRKSGLDCTWMDARDVLVVIPTSSNQVDPDFVESEKRLEKWFTQNSAKI 266 E S +LAA ++ G+ +++DARD LV +F + K ++ F + I Sbjct: 125 ERLSNFILAAGLQAKGIGTSYVDARD-LVKTDDRFGHAKVNFKTTNKLIQDHFKSHD-DI 182 Query: 267 IIATGFIASTPQNIPTTLKRDGSDFSAAIMSALFRSHQLTIWTDVDGVYSADPRKVSEAV 326 + TGFI ST + TT+ R GSD++A+I +A + Q+ IWTDV GV +ADPR V A Sbjct: 183 KVITGFIGSTEKGETTTVGRSGSDYTASIFAAALGAEQVEIWTDVSGVMTADPRLVYTAF 242 Query: 327 VLKTLSYQEAWEMSYFGANVLHPRTIIPVMKYDIPIVIRNIFNLSAPGTMICRQIDDEDG 386 + LSY EA E+S+FGA V+ P T+ P MK DIPI I+N F GT I + D +G Sbjct: 243 TIPQLSYNEAMELSHFGAKVVFPATMQPAMKEDIPIYIKNTFKPDEAGTRISK--DSGEG 300 Query: 387 FKLDAPVKGFATIDNLALVNVEGTGMAGVPGTASAIFSAVKEVGANVIMISQASSEHSVC 446 +KG +++DN++++NV+G G+ V G + F + G N+I+ISQASSEHS+C Sbjct: 301 ----KIIKGISSMDNISILNVQGPGLVEVVGVSQRFFGTLANNGINIILISQASSEHSIC 356 Query: 447 FAVPEKEVKAVSEALNSRFRQALAGGRLSQIEIIPNCSILAAVGQKMASTPGVSATFFNA 506 A+ K+ + FR + G + +I+I+P+ +++A VG+ M PG S F A Sbjct: 357 VAIASKDASRAKSVIEEEFRYEIQSGEMDEIQIVPDMAVIAVVGENMQHNPGASGRMFQA 416 Query: 507 LAKANINIRAIAQGCSEFNITVVVKREDCIRALRAVHSRFYLSR-TTLAVGIIGPGLIGG 565 L + N+N+ AIAQG SE NI+ V+ + D +AL A+H F+LS L + ++G GLIG Sbjct: 417 LGRNNVNVAAIAQGSSELNISAVITQADLQKALNALHEAFFLSDYKVLHLFLVGVGLIGK 476 Query: 566 TLLDQIRDQAAVLKEEFKIDLRVIGITGSSKMLMSESGIDLSRWRELMKEEGEKADMEKF 625 L I Q L+EE +D+++ G+ S M E G DL+ E E DM+KF Sbjct: 477 ALTKMIHQQLKNLQEENMLDIQIHGMANSRYMKFHEDGFDLATVGP-PDENDEPMDMDKF 535 Query: 626 TQYVKGNHFIPNSVMVDCTADADIASCYYDWLLRGIHVVTPNKKANSGPLDQYLKIRDLQ 685 + +F NSV VDCTA D+A Y L + +VTPNKKANSGPL+ Y K++ L Sbjct: 536 IGTMTEMNF-SNSVFVDCTASQDVADIYEQILDSKVGIVTPNKKANSGPLETYKKLKKLA 594 Query: 686 RKSYTHYFYEATVGAGLPIISTLRGLLETGDKILRIEGIFSGTLSYLFNNFVGTRSFSEV 745 + +FYE V AGLP+I+TL+ L+ +GD + RIE + SG+++Y+F+ FSEV Sbjct: 595 GQRGVRFFYETNVAAGLPVINTLQDLMLSGDHVHRIEAVLSGSMNYIFSELEKGMPFSEV 654 Query: 746 VAEAKQAGFTEPDPRDDLSGTDVARKVTILARESGLKLDLEGLPVQNLVPKPLQACASAE 805 VA+AK+ G+TEPDPRDDLSG DVARK+ IL RE+G L E + +Q++VP+ + AS Sbjct: 655 VAQAKEKGYTEPDPRDDLSGMDVARKILILGREAGQDLHFEDVEIQSMVPEDCEDAASVP 714 Query: 806 EFMEKLPQFDEELSKQREEAEAAGEVLRYVGVVDAVEKKGTVELKRYKKDHPFAQLSGAD 865 EF +KL + D + +EA A GE LR++ ++ K V L +HPF L G+D Sbjct: 715 EFFKKLQKHDGHFQQLLDEANAKGEKLRFMATLE--NGKAKVGLNSLDSEHPFFTLKGSD 772 Query: 866 NIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLAFY 906 N+I FTT+RY + P+IVRGPGAGA VTA G+F+DI+RL Y Sbjct: 773 NMILFTTERYNDFPMIVRGPGAGADVTAAGVFADIIRLGNY 813 Lambda K H 0.319 0.134 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 1447 Number of extensions: 59 Number of successful extensions: 8 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 911 Length of database: 815 Length adjustment: 42 Effective length of query: 869 Effective length of database: 773 Effective search space: 671737 Effective search space used: 671737 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 56 (26.2 bits)
Align candidate Echvi_2000 Echvi_2000 (aspartate kinase)
to HMM TIGR00657 (aspartate kinase (EC 2.7.2.4))
../bin/blast/fastacmd -i /tmp/list.13009.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.13009.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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