Align phosphoserine aminotransferase; EC 2.6.1.52 (characterized)
to candidate RR42_RS04455 RR42_RS04455 MFS transporter
Query= CharProtDB::CH_002572 (362 letters) >FitnessBrowser__Cup4G11:RR42_RS04455 Length = 386 Score = 362 bits (929), Expect = e-105 Identities = 186/365 (50%), Positives = 247/365 (67%), Gaps = 9/365 (2%) Query: 3 QIFNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLN 62 +++NFS GPA LP EVL QA E+ W+G G SVME+SHR +EF + EA + R+LL Sbjct: 20 RVYNFSPGPAALPTEVLLQAADEMLSWHGSGVSVMEMSHRSREFESIQAEALANLRELLQ 79 Query: 63 VPSNYKVLFCHGGGRGQFAAVPLNIL----GDKTTADYVDAGYWAASAIKEAKKYCTPNV 118 VP N+++LF GG G+ VPLN++ D+ AD+V G W+ + +EA++Y N+ Sbjct: 80 VPKNFRILFLQGGAIGENGIVPLNLMRRVNADRPKADFVVTGTWSVKSEQEARRYGEVNI 139 Query: 119 FDAKVTVDGLRAVKPMREWQLSDNAAYMHYCPNETIDGIAIDETPDFG----ADVVVAAD 174 A T + + +W+LSD+AAY+H C NETI G+ + PD G VV AD Sbjct: 140 A-ATSTAQKFARIPDVADWKLSDDAAYVHLCTNETIVGVEFQDVPDIGQHRDGGPVVVAD 198 Query: 175 FSSTILSRPIDVSRYGVIYAGAQKNIGPAGLTIVIVREDLLGKANIACPSILDYSILNDN 234 SS ILSRP+D SR V Y GAQKNIGPAGLTIVIVREDLLG A+ CPS ++ ++ ++ Sbjct: 199 VSSHILSRPVDWSRVQVAYGGAQKNIGPAGLTIVIVREDLLGHAHPLCPSAFNWRLVAEH 258 Query: 235 GSMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSDFYRNDVAKAN 294 SM+NTPPT++ Y++GLVFKWLKA GGV +++ N K+ LY +D S FYRN++ + Sbjct: 259 DSMYNTPPTYSIYIAGLVFKWLKAQGGVGAIEQRNIAKSHALYEFLDQSAFYRNEIDPGS 318 Query: 295 RSRMNVPFQLADSALDKLFLEESFAAGLHALKGHRVVGGMRASIYNAMPLEGVKALTDFM 354 RSRMNVPF LAD + + FL + A GL LKGH+ VGGMRAS+YNAMP+EGV AL ++M Sbjct: 319 RSRMNVPFFLADESRNDAFLAGARANGLVQLKGHKSVGGMRASLYNAMPIEGVAALIEYM 378 Query: 355 VEFER 359 EFER Sbjct: 379 REFER 383 Lambda K H 0.319 0.136 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 417 Number of extensions: 12 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 362 Length of database: 386 Length adjustment: 30 Effective length of query: 332 Effective length of database: 356 Effective search space: 118192 Effective search space used: 118192 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (23.9 bits)
Align candidate RR42_RS04455 RR42_RS04455 (MFS transporter)
to HMM TIGR01364 (serC: phosphoserine transaminase (EC 2.6.1.52))
../bin/blast/fastacmd -i /tmp/list.444.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.444.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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