Align acetohydroxyacid synthase subunit B (EC 2.2.1.6) (characterized)
to candidate RR42_RS05435 RR42_RS05435 acetolactate synthase 3 catalytic subunit
Query= metacyc::MONOMER-18810 (585 letters) >FitnessBrowser__Cup4G11:RR42_RS05435 Length = 586 Score = 1132 bits (2929), Expect = 0.0 Identities = 555/585 (94%), Positives = 575/585 (98%), Gaps = 1/585 (0%) Query: 1 MPSAEFSHADSNSSAAPEMIGAEILVHALAEEGVEYVWGYPGGAVLYIYDELHKQTKFEH 60 MPSAEF HADSNSSAAPEMIGAEILVHALAEEGVEYVWGYPGGAVLYIYDE +KQ K EH Sbjct: 3 MPSAEF-HADSNSSAAPEMIGAEILVHALAEEGVEYVWGYPGGAVLYIYDEFYKQKKIEH 61 Query: 61 ILVRHEQAAVHAADGYARATGKVGVALVTSGPGVTNAVTGIATAYLDSIPMVVITGNVPT 120 ILVRHEQAAVHAADGYARATGKVG ALVTSGPGVTNAVTGIATAYLDSIPMV+ITGNVPT Sbjct: 62 ILVRHEQAAVHAADGYARATGKVGCALVTSGPGVTNAVTGIATAYLDSIPMVIITGNVPT 121 Query: 121 HAIGQDAFQECDTVGITRPIVKHNFLVKDVRDLAATIKKAFFIAATGRPGPVVVDIPKDV 180 HAIGQDAFQECDTVGITRPIVKHNFLVKDVRDLAATIKKAF+IAATGRPGPVVVDIPKDV Sbjct: 122 HAIGQDAFQECDTVGITRPIVKHNFLVKDVRDLAATIKKAFYIAATGRPGPVVVDIPKDV 181 Query: 181 SRNACKYEYPKSIDMRSYNPVNKGHSGQIRKAVALLQGAERPYIYTGGGVVLANASDELR 240 SRN+CKYEYPKSIDMRSYNPVNKGHSGQIRKA+ALLQGAERP+IY GGGVVLANAS+ELR Sbjct: 182 SRNSCKYEYPKSIDMRSYNPVNKGHSGQIRKALALLQGAERPFIYAGGGVVLANASEELR 241 Query: 241 QLAALTGHPVTNTLMGLGAFPGTSKQFVGMLGMHGTYEANMAMQNCDVLIAIGARFDDRV 300 QLAALTGHPVTNTLMGLG+FPGTSKQFVGMLGMHGTYEANMAMQNCDVLIAIGARFDDRV Sbjct: 242 QLAALTGHPVTNTLMGLGSFPGTSKQFVGMLGMHGTYEANMAMQNCDVLIAIGARFDDRV 301 Query: 301 IGNPAHFTSQARKIIHIDIDPSSISKRVKVDIPIVGNVKDVLQELIAQIKASDIKPKREA 360 IGNPAHFTSQ RKIIHIDIDPSSISKRVKVDIPIVG+VKDVLQELI+Q++ASD+KPKREA Sbjct: 302 IGNPAHFTSQPRKIIHIDIDPSSISKRVKVDIPIVGHVKDVLQELISQLQASDVKPKREA 361 Query: 361 LAKWWEQIEQWRSVDCLKYDRSSEIIKPQYVVEKIWELTKGDAFICSDVGQHQMWAAQFY 420 LAKWWEQIEQWRSVDCLKYDR+SEIIKPQYVVEKIWELT GDAF+CSDVGQHQMWAAQFY Sbjct: 362 LAKWWEQIEQWRSVDCLKYDRNSEIIKPQYVVEKIWELTHGDAFVCSDVGQHQMWAAQFY 421 Query: 421 KFDEPRRWINSGGLGTMGVGLPYAMGIKKAFPEKEVVTITGEGSIQMCIQELSTCLQYDT 480 KF+EPRRWINSGGLGTMGVGLPYAMGIKKAFPEKEVVTITGEGSIQM IQELSTCLQYDT Sbjct: 422 KFNEPRRWINSGGLGTMGVGLPYAMGIKKAFPEKEVVTITGEGSIQMNIQELSTCLQYDT 481 Query: 481 PVKICSLNNGYLGMVRQWQEIEYDNRYSHSYMDALPDFVKLAEAYGHVGMRVEKTSDVEP 540 PVKIC+LNN YLGMVRQWQEIEYDNRYSHSYMDALPDFVKLAEAYGH+GMR+EKT+DVEP Sbjct: 482 PVKICALNNRYLGMVRQWQEIEYDNRYSHSYMDALPDFVKLAEAYGHIGMRIEKTADVEP 541 Query: 541 ALREAFRLKDRTVFLDFQTDPTENVWPMVQAGKGISEMLLGAEDL 585 ALREAFRLKDRTVFLDFQTDPTENVWPMVQAGKGISEMLLGAEDL Sbjct: 542 ALREAFRLKDRTVFLDFQTDPTENVWPMVQAGKGISEMLLGAEDL 586 Lambda K H 0.319 0.135 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 1233 Number of extensions: 30 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 585 Length of database: 586 Length adjustment: 37 Effective length of query: 548 Effective length of database: 549 Effective search space: 300852 Effective search space used: 300852 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 53 (25.0 bits)
Align candidate RR42_RS05435 RR42_RS05435 (acetolactate synthase 3 catalytic subunit)
to HMM TIGR00118 (ilvB: acetolactate synthase, large subunit, biosynthetic type (EC 2.2.1.6))
../bin/blast/fastacmd -i /tmp/list.21941.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.21941.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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