GapMind for Amino acid biosynthesis

 

Alignments for a candidate for ilvH in Cupriavidus basilensis 4G11

Align acetohydroxyacid synthase subunit B (EC 2.2.1.6) (characterized)
to candidate RR42_RS05435 RR42_RS05435 acetolactate synthase 3 catalytic subunit

Query= metacyc::MONOMER-18810
         (585 letters)



>FitnessBrowser__Cup4G11:RR42_RS05435
          Length = 586

 Score = 1132 bits (2929), Expect = 0.0
 Identities = 555/585 (94%), Positives = 575/585 (98%), Gaps = 1/585 (0%)

Query: 1   MPSAEFSHADSNSSAAPEMIGAEILVHALAEEGVEYVWGYPGGAVLYIYDELHKQTKFEH 60
           MPSAEF HADSNSSAAPEMIGAEILVHALAEEGVEYVWGYPGGAVLYIYDE +KQ K EH
Sbjct: 3   MPSAEF-HADSNSSAAPEMIGAEILVHALAEEGVEYVWGYPGGAVLYIYDEFYKQKKIEH 61

Query: 61  ILVRHEQAAVHAADGYARATGKVGVALVTSGPGVTNAVTGIATAYLDSIPMVVITGNVPT 120
           ILVRHEQAAVHAADGYARATGKVG ALVTSGPGVTNAVTGIATAYLDSIPMV+ITGNVPT
Sbjct: 62  ILVRHEQAAVHAADGYARATGKVGCALVTSGPGVTNAVTGIATAYLDSIPMVIITGNVPT 121

Query: 121 HAIGQDAFQECDTVGITRPIVKHNFLVKDVRDLAATIKKAFFIAATGRPGPVVVDIPKDV 180
           HAIGQDAFQECDTVGITRPIVKHNFLVKDVRDLAATIKKAF+IAATGRPGPVVVDIPKDV
Sbjct: 122 HAIGQDAFQECDTVGITRPIVKHNFLVKDVRDLAATIKKAFYIAATGRPGPVVVDIPKDV 181

Query: 181 SRNACKYEYPKSIDMRSYNPVNKGHSGQIRKAVALLQGAERPYIYTGGGVVLANASDELR 240
           SRN+CKYEYPKSIDMRSYNPVNKGHSGQIRKA+ALLQGAERP+IY GGGVVLANAS+ELR
Sbjct: 182 SRNSCKYEYPKSIDMRSYNPVNKGHSGQIRKALALLQGAERPFIYAGGGVVLANASEELR 241

Query: 241 QLAALTGHPVTNTLMGLGAFPGTSKQFVGMLGMHGTYEANMAMQNCDVLIAIGARFDDRV 300
           QLAALTGHPVTNTLMGLG+FPGTSKQFVGMLGMHGTYEANMAMQNCDVLIAIGARFDDRV
Sbjct: 242 QLAALTGHPVTNTLMGLGSFPGTSKQFVGMLGMHGTYEANMAMQNCDVLIAIGARFDDRV 301

Query: 301 IGNPAHFTSQARKIIHIDIDPSSISKRVKVDIPIVGNVKDVLQELIAQIKASDIKPKREA 360
           IGNPAHFTSQ RKIIHIDIDPSSISKRVKVDIPIVG+VKDVLQELI+Q++ASD+KPKREA
Sbjct: 302 IGNPAHFTSQPRKIIHIDIDPSSISKRVKVDIPIVGHVKDVLQELISQLQASDVKPKREA 361

Query: 361 LAKWWEQIEQWRSVDCLKYDRSSEIIKPQYVVEKIWELTKGDAFICSDVGQHQMWAAQFY 420
           LAKWWEQIEQWRSVDCLKYDR+SEIIKPQYVVEKIWELT GDAF+CSDVGQHQMWAAQFY
Sbjct: 362 LAKWWEQIEQWRSVDCLKYDRNSEIIKPQYVVEKIWELTHGDAFVCSDVGQHQMWAAQFY 421

Query: 421 KFDEPRRWINSGGLGTMGVGLPYAMGIKKAFPEKEVVTITGEGSIQMCIQELSTCLQYDT 480
           KF+EPRRWINSGGLGTMGVGLPYAMGIKKAFPEKEVVTITGEGSIQM IQELSTCLQYDT
Sbjct: 422 KFNEPRRWINSGGLGTMGVGLPYAMGIKKAFPEKEVVTITGEGSIQMNIQELSTCLQYDT 481

Query: 481 PVKICSLNNGYLGMVRQWQEIEYDNRYSHSYMDALPDFVKLAEAYGHVGMRVEKTSDVEP 540
           PVKIC+LNN YLGMVRQWQEIEYDNRYSHSYMDALPDFVKLAEAYGH+GMR+EKT+DVEP
Sbjct: 482 PVKICALNNRYLGMVRQWQEIEYDNRYSHSYMDALPDFVKLAEAYGHIGMRIEKTADVEP 541

Query: 541 ALREAFRLKDRTVFLDFQTDPTENVWPMVQAGKGISEMLLGAEDL 585
           ALREAFRLKDRTVFLDFQTDPTENVWPMVQAGKGISEMLLGAEDL
Sbjct: 542 ALREAFRLKDRTVFLDFQTDPTENVWPMVQAGKGISEMLLGAEDL 586


Lambda     K      H
   0.319    0.135    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1233
Number of extensions: 30
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 586
Length adjustment: 37
Effective length of query: 548
Effective length of database: 549
Effective search space:   300852
Effective search space used:   300852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)

Align candidate RR42_RS05435 RR42_RS05435 (acetolactate synthase 3 catalytic subunit)
to HMM TIGR00118 (ilvB: acetolactate synthase, large subunit, biosynthetic type (EC 2.2.1.6))

Software error:

../bin/blast/fastacmd -i /tmp/list.21941.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.21941.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.