Align Aspartate-semialdehyde dehydrogenase; ASA dehydrogenase; ASADH; Aspartate-beta-semialdehyde dehydrogenase; EC 1.2.1.11 (characterized)
to candidate RR42_RS14380 RR42_RS14380 aspartate-semialdehyde dehydrogenase
Query= SwissProt::Q51344 (370 letters) >FitnessBrowser__Cup4G11:RR42_RS14380 Length = 378 Score = 511 bits (1316), Expect = e-149 Identities = 254/375 (67%), Positives = 299/375 (79%), Gaps = 9/375 (2%) Query: 4 VGLIGWRGMVGSVLMQRMLEERDFDLIEPVFFTTSNVGGQGPEVGKDIAPLKDAYSIDEL 63 VGL+GWRGMVGSVLMQRM EERDFD IEPVFF+TSN GGQ P + K+ LKDA I+ L Sbjct: 3 VGLVGWRGMVGSVLMQRMQEERDFDHIEPVFFSTSNAGGQAPAMAKNETKLKDANDIEAL 62 Query: 64 KTLDVILTCQGGDYTSEVFPKLREAGWQGYWIDAASSLRMEDDAVIVLDPVNRKVIDQAL 123 K DV+LT QGGDYT+E+FP+LR AGW+GYWIDAASSLRM+DDA+IVLDPVN VI AL Sbjct: 63 KKCDVVLTAQGGDYTNEIFPQLRAAGWKGYWIDAASSLRMKDDAIIVLDPVNLGVIKDAL 122 Query: 124 DAGTRNYIGGNCTVSLMLMALGGLFDAGLVEWMSAMTYQAASGAGAQNMRELLKQMGAAH 183 G +N+IGGNCTVS M+M LGGLF L++WM++MTYQAASG GAQ+MRELL Q G + Sbjct: 123 AKGVKNFIGGNCTVSCMMMGLGGLFQHDLIDWMTSMTYQAASGGGAQHMRELLTQFGTLN 182 Query: 184 ASVADDLANPASAILDIDRKVAETLRS-EAFPTEHFGAPLGGSLIPWIDKELPNGQSREE 242 ASV L NPASAIL+IDR + T A T+ FG PL G+LIPWIDK+L NG S+EE Sbjct: 183 ASVKSLLDNPASAILEIDRTILATQHGLSADETKQFGVPLAGNLIPWIDKDLGNGVSKEE 242 Query: 243 WKAQAETNKILARFKN--------PIPVDGICVRVGAMRCHSQALTIKLNKDVPLTDIEG 294 WKA AETNKIL R + PI VDG+CVR+GAMRCHSQALTIKL +DVPL +IE Sbjct: 243 WKAGAETNKILGRGEGFLGATGAAPIAVDGLCVRIGAMRCHSQALTIKLRRDVPLDEIEA 302 Query: 295 LISQHNPWVKLVPNHREVSVRELTPAAVTGTLSVPVGRLRKLNMGSQYLGAFTVGDQLLW 354 +++++N W K+VPN RE S+ +LTPAAVTGTL++PVGRLRK+ MG +YL AFTVGDQLLW Sbjct: 303 MLAENNQWAKVVPNTREASMTDLTPAAVTGTLTIPVGRLRKMQMGGEYLSAFTVGDQLLW 362 Query: 355 GAAEPLRRMLRILLE 369 GAAEPLRRMLRIL+E Sbjct: 363 GAAEPLRRMLRILIE 377 Lambda K H 0.319 0.136 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 518 Number of extensions: 14 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 370 Length of database: 378 Length adjustment: 30 Effective length of query: 340 Effective length of database: 348 Effective search space: 118320 Effective search space used: 118320 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (23.9 bits)
Align candidate RR42_RS14380 RR42_RS14380 (aspartate-semialdehyde dehydrogenase)
to HMM TIGR01745 (asd: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11))
../bin/blast/fastacmd -i /tmp/list.9497.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.9497.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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