Align Aspartate-semialdehyde dehydrogenase 2; ASA dehydrogenase 2; ASADH 2; Aspartate-beta-semialdehyde dehydrogenase 2; EC 1.2.1.11 (characterized)
to candidate Ga0059261_4003 Ga0059261_4003 aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)
Query= SwissProt::P23247 (337 letters) >FitnessBrowser__Korea:Ga0059261_4003 Length = 341 Score = 326 bits (836), Expect = 5e-94 Identities = 178/335 (53%), Positives = 225/335 (67%), Gaps = 7/335 (2%) Query: 5 FNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFN--GKTVRVQNVEEF 62 + V + GATG VG ML +L EREFP+DEL +LAS RS G F GK ++QN+E F Sbjct: 3 YRVVVAGATGNVGREMLNILAEREFPIDELAVLASSRSTGDMVDFGETGKQYKIQNIEHF 62 Query: 63 DWSQVHIALFSAGGELSAKWAPIAAEAGVVVIDNTSHFRYDYDIPLVVPEVNPEAIAEFR 122 D + +ALF+ G E + AP A AG VIDN+S +R D D+PL+VPEVNPEAI ++ Sbjct: 63 DPTGWDMALFAIGSEATKVHAPRFAAAGCTVIDNSSLYRMDPDVPLIVPEVNPEAIDGYK 122 Query: 123 NRNIIANPNCSTIQMLVALKPIYDAVGIERINVTTYQSVSGAGKAGIDELAGQTAKLLNG 182 +NIIANPNCST QM+VALKP++DA G++R+ V TYQSVSGAGK G+DEL Q+ + G Sbjct: 123 AKNIIANPNCSTAQMVVALKPLHDAAGVKRVVVATYQSVSGAGKEGMDELFEQSRNIFVG 182 Query: 183 YPAETNTFSQQIAFNCIPQIDQFMDNGYTKEEMKMVWETQKIFNDPSIMVNPTCVRVPVF 242 AE F++QIAFN IP ID F+D+GYTKEE KMV ET+KI DP + V TCVRVPVF Sbjct: 183 DQAEPKKFTKQIAFNVIPHIDSFLDDGYTKEEWKMVVETKKIL-DPKVKVTATCVRVPVF 241 Query: 243 YGHAEAVHVETRAPIDAEQVMDMLEQTDGIELF---RGADFPTQVRDAGGKDHVLVGRVR 299 GH+EAV+VE + AE +L + GI L + T V + G V RVR Sbjct: 242 VGHSEAVNVELERELSAEDAQKILREAPGIMLVDKREDGGYVTPV-ECVGDYATFVSRVR 300 Query: 300 NDISHHSGINLWVVADNVRKGAATNAVQIAELLVR 334 D++ +G+ W V+DN+RKGAA NAVQIAELL R Sbjct: 301 EDVTVENGLAFWCVSDNLRKGAALNAVQIAELLGR 335 Lambda K H 0.319 0.135 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 335 Number of extensions: 15 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 337 Length of database: 341 Length adjustment: 28 Effective length of query: 309 Effective length of database: 313 Effective search space: 96717 Effective search space used: 96717 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 49 (23.5 bits)
Align candidate Ga0059261_4003 Ga0059261_4003 (aspartate-semialdehyde dehydrogenase (peptidoglycan organisms))
to HMM TIGR01296 (asd: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11))
../bin/blast/fastacmd -i /tmp/list.3090.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.3090.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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