Align acetolactate synthase (subunit 2/2) (EC 2.2.1.6) (characterized)
to candidate BWI76_RS04695 BWI76_RS04695 acetolactate synthase 3 large subunit
Query= BRENDA::P00893 (574 letters) >FitnessBrowser__Koxy:BWI76_RS04695 Length = 574 Score = 1066 bits (2757), Expect = 0.0 Identities = 525/574 (91%), Positives = 547/574 (95%) Query: 1 MEMLSGAEMVVRSLIDQGVKQVFGYPGGAVLDIYDALHTVGGIDHVLVRHEQAAVHMADG 60 MEMLSGAEMVV+SL+DQGVKQVFGYPGGAVLDIYDALHT+GGIDHVLVRHEQAAVHMADG Sbjct: 1 MEMLSGAEMVVQSLVDQGVKQVFGYPGGAVLDIYDALHTLGGIDHVLVRHEQAAVHMADG 60 Query: 61 LARATGEVGVVLVTSGPGATNAITGIATAYMDSIPLVVLSGQVATSLIGYDAFQECDMVG 120 LARATGEVGVVLVTSGPGATNAITGIATAYMDSIPLV+LSGQVATSLIGYDAFQECDMVG Sbjct: 61 LARATGEVGVVLVTSGPGATNAITGIATAYMDSIPLVILSGQVATSLIGYDAFQECDMVG 120 Query: 121 ISRPVVKHSFLVKQTEDIPQVLKKAFWLAASGRPGPVVVDLPKDILNPANKLPYVWPESV 180 ISRPVVKHSFLVKQTEDIP VLKKAFWLAASGRPGPVVVDLPKDILNPA KLPYVWP++V Sbjct: 121 ISRPVVKHSFLVKQTEDIPGVLKKAFWLAASGRPGPVVVDLPKDILNPAKKLPYVWPDTV 180 Query: 181 SMRSYNPTTTGHKGQIKRALQTLVAAKKPVVYVGGGAITAGCHQQLKETVEALNLPVVCS 240 SMRSYNPTT+GHKGQIKRALQTLVAAKKPVVYVGGGAI A C QL VE L LPV S Sbjct: 181 SMRSYNPTTSGHKGQIKRALQTLVAAKKPVVYVGGGAINAQCEPQLYTLVEKLKLPVASS 240 Query: 241 LMGLGAFPATHRQALGMLGMHGTYEANMTMHNADVIFAVGVRFDDRTTNNLAKYCPNATV 300 LMGLGAFPA+H+QALGMLGMHGTYEANMTMHN+DVIFAVGVRFDDRTTNNLA+YCPNATV Sbjct: 241 LMGLGAFPASHQQALGMLGMHGTYEANMTMHNSDVIFAVGVRFDDRTTNNLARYCPNATV 300 Query: 301 LHIDIDPTSISKTVTADIPIVGDARQVLEQMLELLSQESAHQPLDEIRDWWQQIEQWRAR 360 LHIDIDPTSISKTV AD+PIVGDAR VLEQMLELL E QPLDEIRDWWQQIEQWRAR Sbjct: 301 LHIDIDPTSISKTVPADVPIVGDARLVLEQMLELLEHEETQQPLDEIRDWWQQIEQWRAR 360 Query: 361 QCLKYDTHSEKIKPQAVIETLWRLTKGDAYVTSDVGQHQMFAALYYPFDKPRRWINSGGL 420 CL+YDT S KIKPQAVIET+WRLT GDAYVTSDVGQHQMFAALYYPFDKPRRWINSGGL Sbjct: 361 HCLQYDTQSGKIKPQAVIETIWRLTHGDAYVTSDVGQHQMFAALYYPFDKPRRWINSGGL 420 Query: 421 GTMGFGLPAALGVKMALPEETVVCVTGDGSIQMNIQELSTALQYELPVLVVNLNNRYLGM 480 GTMGFGLPAALGVKMALPEETV+CVTGDGSIQMNIQELSTALQYELPVLV+NLNNRYLGM Sbjct: 421 GTMGFGLPAALGVKMALPEETVICVTGDGSIQMNIQELSTALQYELPVLVLNLNNRYLGM 480 Query: 481 VKQWQDMIYSGRHSQSYMQSLPDFVRLAEAYGHVGIQISHPHELESKLSEALEQVRNNRL 540 VKQWQDM+YSGRHSQSYM+SLPDF R+AEAYGHVGI+IS P ELE+KL+EALEQVRNNRL Sbjct: 481 VKQWQDMLYSGRHSQSYMESLPDFARVAEAYGHVGIRISDPQELEAKLAEALEQVRNNRL 540 Query: 541 VFVDVTVDGSEHVYPMQIRGGGMDEMWLSKTERT 574 VFVDVTVDGSEHVYPMQIRGGGMDEMWLSKTERT Sbjct: 541 VFVDVTVDGSEHVYPMQIRGGGMDEMWLSKTERT 574 Lambda K H 0.319 0.135 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 1217 Number of extensions: 31 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 574 Length of database: 574 Length adjustment: 36 Effective length of query: 538 Effective length of database: 538 Effective search space: 289444 Effective search space used: 289444 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 53 (25.0 bits)
Align candidate BWI76_RS04695 BWI76_RS04695 (acetolactate synthase 3 large subunit)
to HMM TIGR00118 (ilvB: acetolactate synthase, large subunit, biosynthetic type (EC 2.2.1.6))
../bin/blast/fastacmd -i /tmp/list.23370.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.23370.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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