GapMind for Amino acid biosynthesis

 

Alignments for a candidate for ilvH in Klebsiella michiganensis M5al

Align acetolactate synthase (subunit 2/2) (EC 2.2.1.6) (characterized)
to candidate BWI76_RS04695 BWI76_RS04695 acetolactate synthase 3 large subunit

Query= BRENDA::P00893
         (574 letters)



>FitnessBrowser__Koxy:BWI76_RS04695
          Length = 574

 Score = 1066 bits (2757), Expect = 0.0
 Identities = 525/574 (91%), Positives = 547/574 (95%)

Query: 1   MEMLSGAEMVVRSLIDQGVKQVFGYPGGAVLDIYDALHTVGGIDHVLVRHEQAAVHMADG 60
           MEMLSGAEMVV+SL+DQGVKQVFGYPGGAVLDIYDALHT+GGIDHVLVRHEQAAVHMADG
Sbjct: 1   MEMLSGAEMVVQSLVDQGVKQVFGYPGGAVLDIYDALHTLGGIDHVLVRHEQAAVHMADG 60

Query: 61  LARATGEVGVVLVTSGPGATNAITGIATAYMDSIPLVVLSGQVATSLIGYDAFQECDMVG 120
           LARATGEVGVVLVTSGPGATNAITGIATAYMDSIPLV+LSGQVATSLIGYDAFQECDMVG
Sbjct: 61  LARATGEVGVVLVTSGPGATNAITGIATAYMDSIPLVILSGQVATSLIGYDAFQECDMVG 120

Query: 121 ISRPVVKHSFLVKQTEDIPQVLKKAFWLAASGRPGPVVVDLPKDILNPANKLPYVWPESV 180
           ISRPVVKHSFLVKQTEDIP VLKKAFWLAASGRPGPVVVDLPKDILNPA KLPYVWP++V
Sbjct: 121 ISRPVVKHSFLVKQTEDIPGVLKKAFWLAASGRPGPVVVDLPKDILNPAKKLPYVWPDTV 180

Query: 181 SMRSYNPTTTGHKGQIKRALQTLVAAKKPVVYVGGGAITAGCHQQLKETVEALNLPVVCS 240
           SMRSYNPTT+GHKGQIKRALQTLVAAKKPVVYVGGGAI A C  QL   VE L LPV  S
Sbjct: 181 SMRSYNPTTSGHKGQIKRALQTLVAAKKPVVYVGGGAINAQCEPQLYTLVEKLKLPVASS 240

Query: 241 LMGLGAFPATHRQALGMLGMHGTYEANMTMHNADVIFAVGVRFDDRTTNNLAKYCPNATV 300
           LMGLGAFPA+H+QALGMLGMHGTYEANMTMHN+DVIFAVGVRFDDRTTNNLA+YCPNATV
Sbjct: 241 LMGLGAFPASHQQALGMLGMHGTYEANMTMHNSDVIFAVGVRFDDRTTNNLARYCPNATV 300

Query: 301 LHIDIDPTSISKTVTADIPIVGDARQVLEQMLELLSQESAHQPLDEIRDWWQQIEQWRAR 360
           LHIDIDPTSISKTV AD+PIVGDAR VLEQMLELL  E   QPLDEIRDWWQQIEQWRAR
Sbjct: 301 LHIDIDPTSISKTVPADVPIVGDARLVLEQMLELLEHEETQQPLDEIRDWWQQIEQWRAR 360

Query: 361 QCLKYDTHSEKIKPQAVIETLWRLTKGDAYVTSDVGQHQMFAALYYPFDKPRRWINSGGL 420
            CL+YDT S KIKPQAVIET+WRLT GDAYVTSDVGQHQMFAALYYPFDKPRRWINSGGL
Sbjct: 361 HCLQYDTQSGKIKPQAVIETIWRLTHGDAYVTSDVGQHQMFAALYYPFDKPRRWINSGGL 420

Query: 421 GTMGFGLPAALGVKMALPEETVVCVTGDGSIQMNIQELSTALQYELPVLVVNLNNRYLGM 480
           GTMGFGLPAALGVKMALPEETV+CVTGDGSIQMNIQELSTALQYELPVLV+NLNNRYLGM
Sbjct: 421 GTMGFGLPAALGVKMALPEETVICVTGDGSIQMNIQELSTALQYELPVLVLNLNNRYLGM 480

Query: 481 VKQWQDMIYSGRHSQSYMQSLPDFVRLAEAYGHVGIQISHPHELESKLSEALEQVRNNRL 540
           VKQWQDM+YSGRHSQSYM+SLPDF R+AEAYGHVGI+IS P ELE+KL+EALEQVRNNRL
Sbjct: 481 VKQWQDMLYSGRHSQSYMESLPDFARVAEAYGHVGIRISDPQELEAKLAEALEQVRNNRL 540

Query: 541 VFVDVTVDGSEHVYPMQIRGGGMDEMWLSKTERT 574
           VFVDVTVDGSEHVYPMQIRGGGMDEMWLSKTERT
Sbjct: 541 VFVDVTVDGSEHVYPMQIRGGGMDEMWLSKTERT 574


Lambda     K      H
   0.319    0.135    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1217
Number of extensions: 31
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 574
Length adjustment: 36
Effective length of query: 538
Effective length of database: 538
Effective search space:   289444
Effective search space used:   289444
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)

Align candidate BWI76_RS04695 BWI76_RS04695 (acetolactate synthase 3 large subunit)
to HMM TIGR00118 (ilvB: acetolactate synthase, large subunit, biosynthetic type (EC 2.2.1.6))

Software error:

../bin/blast/fastacmd -i /tmp/list.23370.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.23370.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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