Align aspartate kinase (EC 2.7.2.4) (characterized)
to candidate BWI76_RS01790 BWI76_RS01790 lysine-sensitive aspartokinase 3
Query= BRENDA::P08660 (449 letters) >FitnessBrowser__Koxy:BWI76_RS01790 Length = 449 Score = 760 bits (1963), Expect = 0.0 Identities = 390/449 (86%), Positives = 417/449 (92%) Query: 1 MSEIVVSKFGGTSVADFDAMNRSADIVLSDANVRLVVLSASAGITNLLVALAEGLEPGER 60 M+++VV+KFGGTSVADFDAMNRS D+ L DAN R+VVLSASAG+TNLLVALAEGLEPGER Sbjct: 1 MTDLVVAKFGGTSVADFDAMNRSVDVALLDANTRVVVLSASAGVTNLLVALAEGLEPGER 60 Query: 61 FEKLDAIRNIQFAILERLRYPNVIREEIERLLENITVLAEAAALATSPALTDELVSHGEL 120 F KLDA+R IQF ILERLRYPNVIR+EIERLLENIT LAEAA+LA+S ALTDELVSHGEL Sbjct: 61 FAKLDAMRQIQFNILERLRYPNVIRDEIERLLENITTLAEAASLASSTALTDELVSHGEL 120 Query: 121 MSTLLFVEILRERDVQAQWFDVRKVMRTNDRFGRAEPDIAALAELAALQLLPRLNEGLVI 180 MSTLLFVEILRER + AQWFDVRK+MRTNDRFGRAEPDIAAL+EL QL PRL EGLVI Sbjct: 121 MSTLLFVEILRERGIAAQWFDVRKIMRTNDRFGRAEPDIAALSELTQQQLTPRLAEGLVI 180 Query: 181 TQGFIGSENKGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIYTTDPRVVSAAKRI 240 TQGFIGSE KGRTTTLGRGGSDYTAALL EAL+A+RVDIWTDVPGIYTTDPRV AAKRI Sbjct: 181 TQGFIGSEAKGRTTTLGRGGSDYTAALLGEALNATRVDIWTDVPGIYTTDPRVAPAAKRI 240 Query: 241 DEIAFAEAAEMATFGAKVLHPATLLPAVRSDIPVFVGSSKDPRAGGTLVCNKTENPPLFR 300 D IAF EAAEMATFGAKVLHPATLLPAVRSDIPVFVGSSK+P+AGGTLVC T+NPPLFR Sbjct: 241 DVIAFEEAAEMATFGAKVLHPATLLPAVRSDIPVFVGSSKEPKAGGTLVCKNTKNPPLFR 300 Query: 301 ALALRRNQTLLTLHSLNMLHSRGFLAEVFGILARHNISVDLITTSEVSVALTLDTTGSTS 360 ALALRR QTLLTLHSLNMLHSRGFLAEVF ILARH+ISVDLITTSEVSVALT+DTTGSTS Sbjct: 301 ALALRRKQTLLTLHSLNMLHSRGFLAEVFSILARHSISVDLITTSEVSVALTMDTTGSTS 360 Query: 361 TGDTLLTQSLLMELSALCRVEVEEGLALVALIGNDLSKACGVGKEVFGVLEPFNIRMICY 420 GDTLLTQ LL ELS+LCRVEVE+ LALVA+IGN+LSKACGVGKEVFGVL+PFNIRMICY Sbjct: 361 AGDTLLTQGLLTELSSLCRVEVEQDLALVAIIGNELSKACGVGKEVFGVLDPFNIRMICY 420 Query: 421 GASSHNLCFLVPGEDAEQVVQKLHSNLFE 449 GASSHNLCFLVPG DAE+VVQKLH NLFE Sbjct: 421 GASSHNLCFLVPGADAEKVVQKLHHNLFE 449 Lambda K H 0.320 0.135 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 633 Number of extensions: 15 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 449 Length of database: 449 Length adjustment: 33 Effective length of query: 416 Effective length of database: 416 Effective search space: 173056 Effective search space used: 173056 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 51 (24.3 bits)
Align candidate BWI76_RS01790 BWI76_RS01790 (lysine-sensitive aspartokinase 3)
to HMM TIGR00656 (aspartate kinase, monofunctional class (EC 2.7.2.4))
../bin/blast/fastacmd -i /tmp/list.7449.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.7449.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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