GapMind for Amino acid biosynthesis

 

Alignments for a candidate for dapA in Klebsiella michiganensis M5al

Align 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) (characterized)
to candidate BWI76_RS20905 BWI76_RS20905 4-hydroxy-tetrahydrodipicolinate synthase

Query= BRENDA::P0A6L2
         (292 letters)



>FitnessBrowser__Koxy:BWI76_RS20905
          Length = 292

 Score =  521 bits (1343), Expect = e-153
 Identities = 255/292 (87%), Positives = 278/292 (95%)

Query: 1   MFTGSIVAIVTPMDEKGNVCRASLKKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVV 60
           MFTGSIVA+VTPMDE GNVCR+SLKKLIDYHVASGTSAIVSVGTTGESATL+H+EH DVV
Sbjct: 1   MFTGSIVALVTPMDENGNVCRSSLKKLIDYHVASGTSAIVSVGTTGESATLSHEEHGDVV 60

Query: 61  MMTLDLADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFK 120
           M TL+LADGRIPVIAGTGANATAEAISLT+RFNDSG+VGCLTVTPYYNRP+QEGL+QHFK
Sbjct: 61  MQTLELADGRIPVIAGTGANATAEAISLTKRFNDSGVVGCLTVTPYYNRPTQEGLFQHFK 120

Query: 121 AIAEHTDLPQILYNVPSRTGCDLLPETVGRLAKVKNIIGIKEATGNLTRVNQIKELVSDD 180
           AIAEHTDLPQILYNVPSRTGCD+LPETVGRLA++KNIIGIKEATGNL+RV+QIKELVSDD
Sbjct: 121 AIAEHTDLPQILYNVPSRTGCDMLPETVGRLAEIKNIIGIKEATGNLSRVHQIKELVSDD 180

Query: 181 FVLLSGDDASALDFMQLGGHGVISVTANVAARDMAQMCKLAAEGHFAEARVINQRLMPLH 240
           F+LLSGDDA+ +DFMQLGGHGVISVT NVAAR+MA+MC+LA  G FAEAR INQRLMPLH
Sbjct: 181 FILLSGDDATGMDFMQLGGHGVISVTTNVAAREMAEMCRLALAGQFAEARAINQRLMPLH 240

Query: 241 NKLFVEPNPIPVKWACKELGLVATDTLRLPMTPITDSGRETVRAALKHAGLL 292
            KLFVEPNPIPVKWACK LGLVATDTLRLPMTPIT++G + V AALKHAGLL
Sbjct: 241 TKLFVEPNPIPVKWACKALGLVATDTLRLPMTPITENGTKVVTAALKHAGLL 292


Lambda     K      H
   0.319    0.134    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 411
Number of extensions: 10
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 292
Length adjustment: 26
Effective length of query: 266
Effective length of database: 266
Effective search space:    70756
Effective search space used:    70756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)

Align candidate BWI76_RS20905 BWI76_RS20905 (4-hydroxy-tetrahydrodipicolinate synthase)
to HMM TIGR00674 (dapA: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7))

Software error:

../bin/blast/fastacmd -i /tmp/list.30452.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.30452.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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