Align 3-dehydroquinate dehydratase; 3-dehydroquinase; Type II DHQase; EC 4.2.1.10 (characterized)
to candidate GFF3278 HP15_3220 dehydroquinase, class II
Query= SwissProt::P43877 (154 letters) >FitnessBrowser__Marino:GFF3278 Length = 133 Score = 174 bits (440), Expect = 6e-49 Identities = 83/133 (62%), Positives = 103/133 (77%), Gaps = 1/133 (0%) Query: 14 MLGKREPHIYGSQTLSDIEQHLQQSAQAQGYELDYFQANGEESLINRIHQA-FQNTDFII 72 MLG REP +YG +TL+DI+ L+ A QG+ L + Q+N E LI R+H+A + DFII Sbjct: 1 MLGTREPEVYGYETLADIDDRLRSLAAEQGHHLLHLQSNAEYELIERVHEARAEGVDFII 60 Query: 73 INPGAFTHTSVAIRDALLAVSIPFIEVHLSNVHAREPFRHHSYLSDVAKGVICGLGAKGY 132 INP AFTHTSVA+RDA+LA IPFIEVHLSNVHAREPFRHHSY SD+A+GVICGLG++GY Sbjct: 61 INPAAFTHTSVALRDAMLASGIPFIEVHLSNVHAREPFRHHSYFSDIAEGVICGLGSQGY 120 Query: 133 DYALDFAISELQK 145 D AL A+ + + Sbjct: 121 DLALQAALKRIHR 133 Lambda K H 0.320 0.137 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 128 Number of extensions: 5 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 154 Length of database: 133 Length adjustment: 16 Effective length of query: 138 Effective length of database: 117 Effective search space: 16146 Effective search space used: 16146 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 42 (20.8 bits)
Align candidate GFF3278 HP15_3220 (dehydroquinase, class II)
to HMM TIGR01088 (aroQ: 3-dehydroquinate dehydratase, type II (EC 4.2.1.10))
../bin/blast/fastacmd -i /tmp/list.32369.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.32369.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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