Align Dihydroxy-acid dehydratase, mitochondrial; DAD; 2,3-dihydroxy acid hydrolyase; EC 4.2.1.9 (characterized)
to candidate GFF3421 HP15_3363 dihydroxy-acid dehydratase
Query= SwissProt::P39522 (585 letters) >FitnessBrowser__Marino:GFF3421 Length = 562 Score = 607 bits (1564), Expect = e-178 Identities = 304/563 (53%), Positives = 397/563 (70%), Gaps = 11/563 (1%) Query: 22 KLNKYSYIITEPKGQGASQAMLYATGFKKEDFKKPQVGVGSCWWSGNPCNMHLLDLNNRC 81 K KYS + + G+ AS+AML A GF EDFKKPQ+G+ S W + PCNMH+ L Sbjct: 9 KRRKYSAPVVDGIGKSASRAMLRAVGFTDEDFKKPQIGIASTWSNLTPCNMHINQLAEES 68 Query: 82 SQSIEKAGLKAMQFNTIGVSDGISMGTKGMRYSLQSREIIADSFETIMMAQHYDANIAIP 141 + ++AG K++ FNTI +SDGI+ GT+GM+YSL SRE+IADS ET+ + +D +AI Sbjct: 69 AAGADEAGGKSLIFNTITISDGIANGTEGMKYSLVSREVIADSIETVAGCEGFDGLVAIG 128 Query: 142 SCDKNMPGVMMAMGRHNRPSIMVYGGTILPGHPTCGSSKISKNIDIVSAFQSYGEYISKQ 201 CDKNMPG MM + R NRPS+ VYGGTI+PG + DI+S F++ G + Sbjct: 129 GCDKNMPGCMMGLARLNRPSVFVYGGTIMPGE---------NHTDIISVFEAVGAHARGD 179 Query: 202 FTEEEREDVVEHACPGPGSCGGMYTANTMASAAEVLGLTIPNSSSFPAVSKEKLAECDNI 261 E + + E A PGPGSCGGMYTANTMASA E +G+++P SS+ AVS+ K +C Sbjct: 180 LDLIEVKQIEETAIPGPGSCGGMYTANTMASAIEAMGMSLPGSSAQNAVSETKAEDCRGA 239 Query: 262 GEYIKKTMELGILPRDILTKEAFENAITYVVATGGSTNAVLHLVAVAHSAGVKLSPDDFQ 321 G + +E I P DI+T++AFENAIT V+A GGSTNAVLHL+A+A + GV L +DF Sbjct: 240 GAAVLNLLEKDIKPSDIMTRKAFENAITVVIALGGSTNAVLHLLAMASTVGVDLELEDFV 299 Query: 322 RISDTTPLIGDFKPSGKYVMADLINVGGTQSVIKYLYENNMLHGNTMTVTGDTLAERAKK 381 I P++ D +PSG Y+M++L+ +GG Q ++K L + +LHG+ +TVTG TLAE Sbjct: 300 EIGKRVPVLADLRPSGHYMMSELVAIGGIQPLMKMLLDRGLLHGDCLTVTGQTLAENLAD 359 Query: 382 APSLPEGQEIIKPLSHPIKANGHLQILYGSLAPGGAVGKITGKEGTYFKGRARVFEEEGA 441 PEGQ+II +PIKA+ HL+IL+G+LAP GAV KITGKEGT+F GRARVF E Sbjct: 360 VDPYPEGQDIIHAFDNPIKADSHLRILFGNLAPTGAVAKITGKEGTHFTGRARVFHSEEE 419 Query: 442 FIEALERGEIKKGEKTVVVIRYEGPRGAPGMPEMLKPSSALMGYGLGKDVALLTDGRFSG 501 E + G + G+ V+VIRYEGP+G PGM EML P+SA+MG GLG DVAL+TDGRFSG Sbjct: 420 AQERILDGTVVAGD--VLVIRYEGPKGGPGMREMLSPTSAIMGKGLGSDVALITDGRFSG 477 Query: 502 GSHGFLIGHIVPEAAEGGPIGLVRDGDEIIIDADNNKIDLLVSDKEMAQRKQSWVAPPPR 561 GSHGF++GHI PEAAEGGPI LV DGD I IDA +N+I+L VSD+E+ +R+Q+W APPPR Sbjct: 478 GSHGFVVGHITPEAAEGGPIALVEDGDTITIDAVSNRIELDVSDQELERRRQAWQAPPPR 537 Query: 562 YTRGTLSKYAKLVSNASNGCVLD 584 +TRGTL+KY++ VS+AS G V D Sbjct: 538 FTRGTLAKYSRTVSSASKGAVTD 560 Lambda K H 0.315 0.134 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 960 Number of extensions: 33 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 585 Length of database: 562 Length adjustment: 36 Effective length of query: 549 Effective length of database: 526 Effective search space: 288774 Effective search space used: 288774 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 53 (25.0 bits)
Align candidate GFF3421 HP15_3363 (dihydroxy-acid dehydratase)
to HMM TIGR00110 (ilvD: dihydroxy-acid dehydratase (EC 4.2.1.9))
../bin/blast/fastacmd -i /tmp/list.18864.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.18864.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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