Align Aspartate-semialdehyde dehydrogenase; ASA dehydrogenase; ASADH; Aspartate-beta-semialdehyde dehydrogenase; EC 1.2.1.11 (characterized)
to candidate Dsui_3197 Dsui_3197 aspartate-semialdehyde dehydrogenase, gamma-proteobacterial
Query= SwissProt::Q51344 (370 letters) >FitnessBrowser__PS:Dsui_3197 Length = 377 Score = 535 bits (1377), Expect = e-156 Identities = 266/376 (70%), Positives = 310/376 (82%), Gaps = 7/376 (1%) Query: 1 MKRVGLIGWRGMVGSVLMQRMLEERDFDLIEPVFFTTSNVGGQGPEVG--KDIAPLKDAY 58 MKRVGL+GWRGMVGSVLMQRM+EE DF IEPV+F+TSN GG+ P G + APL+DA Sbjct: 1 MKRVGLVGWRGMVGSVLMQRMVEEGDFAHIEPVYFSTSNAGGKAPVFGGKEAAAPLQDAI 60 Query: 59 SIDELKTLDVILTCQGGDYTSEVFPKLREAGWQGYWIDAASSLRMEDDAVIVLDPVNRKV 118 S+D LKT D+I+TCQGGDYT EVFPKLR AGW G+WIDAAS+LRM DDAVI+LDPVN+ V Sbjct: 61 SVDALKTCDIIITCQGGDYTKEVFPKLRAAGWNGHWIDAASALRMADDAVIILDPVNKNV 120 Query: 119 IDQALDAGTRNYIGGNCTVSLMLMALGGLFDAGLVEWMSAMTYQAASGAGAQNMRELLKQ 178 I +L G +N+IGGNCTVSLMLM LGGLF L+EW ++MTYQAASGAGAQNMREL+ Q Sbjct: 121 IQDSLAKGGKNWIGGNCTVSLMLMGLGGLFQNDLIEWATSMTYQAASGAGAQNMRELIAQ 180 Query: 179 MGAAHASVADDLANPASAILDIDRKVAETLRSEAFPTEHF-GAPLGGSLIPWIDKELPNG 237 MG HASVAD LA+P+SAIL+IDRKVAET+RS+AFP ++F PL GSLIPWID + NG Sbjct: 181 MGTIHASVADLLADPSSAILEIDRKVAETIRSDAFPKKNFRNTPLAGSLIPWIDVPVENG 240 Query: 238 QSREEWKAQAETNKILA----RFKNPIPVDGICVRVGAMRCHSQALTIKLNKDVPLTDIE 293 QS+EEWK AE NKIL R + IP+DG+CVR+GAMRCHSQALTIKL KDVPL +I Sbjct: 241 QSKEEWKGGAECNKILGKPAFRSQGSIPIDGLCVRIGAMRCHSQALTIKLKKDVPLDEIS 300 Query: 294 GLISQHNPWVKLVPNHREVSVRELTPAAVTGTLSVPVGRLRKLNMGSQYLGAFTVGDQLL 353 ++++ N W K+VPN RE+S RELTPAAVTGTL+VPVGRL K+ MG +YL AFT GDQLL Sbjct: 301 DMLAKANQWAKVVPNEREISERELTPAAVTGTLTVPVGRLHKMAMGPEYLAAFTCGDQLL 360 Query: 354 WGAAEPLRRMLRILLE 369 WGAAEPLRRMLRILLE Sbjct: 361 WGAAEPLRRMLRILLE 376 Lambda K H 0.319 0.136 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 536 Number of extensions: 10 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 370 Length of database: 377 Length adjustment: 30 Effective length of query: 340 Effective length of database: 347 Effective search space: 117980 Effective search space used: 117980 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (23.9 bits)
Align candidate Dsui_3197 Dsui_3197 (aspartate-semialdehyde dehydrogenase, gamma-proteobacterial)
to HMM TIGR01745 (asd: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11))
../bin/blast/fastacmd -i /tmp/list.20888.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.20888.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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