Align carbamoyl-phosphate synthase (glutamine-hydrolysing) (EC 6.3.5.5) (characterized)
to candidate 5210397 Shew_2838 carbamoyl phosphate synthase large subunit (RefSeq)
Query= BRENDA::P00968 (1073 letters) >FitnessBrowser__PV4:5210397 Length = 1073 Score = 1770 bits (4585), Expect = 0.0 Identities = 883/1073 (82%), Positives = 974/1073 (90%), Gaps = 1/1073 (0%) Query: 1 MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEM 60 MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEM Sbjct: 1 MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEM 60 Query: 61 ADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATA 120 ADATYIEPIHWEVVR II KERPDA+LPTMGGQTALNCAL LE +GVL EF V MIGATA Sbjct: 61 ADATYIEPIHWEVVRNIIAKERPDAILPTMGGQTALNCALRLEAEGVLAEFNVDMIGATA 120 Query: 121 DAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADVGFPCIIRPSFTMGGSGGG 180 DAIDKAEDR RFD AMKKIGLE R+GIA +ME+A V VGFPCIIRPSFTMGGSGGG Sbjct: 121 DAIDKAEDRSRFDAAMKKIGLECPRAGIARSMEDAYEVLEQVGFPCIIRPSFTMGGSGGG 180 Query: 181 IAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAM 240 IAYN+EEFEEIC++GL+LSPT ELLIDESLIGWKEYEMEVVRD+NDN IIVCSIENFD M Sbjct: 181 IAYNKEEFEEICSQGLELSPTNELLIDESLIGWKEYEMEVVRDRNDNSIIVCSIENFDPM 240 Query: 241 GIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEM 300 G+HTGDSITVAPAQTLTDKEYQ+MRNAS+AVLREIGVETGGSNVQF +NPK+GR+++IEM Sbjct: 241 GVHTGDSITVAPAQTLTDKEYQLMRNASLAVLREIGVETGGSNVQFGINPKDGRMVIIEM 300 Query: 301 NPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDITGGRTPASFEPSIDYVVTKIP 360 NPRVSRSSALASKATGFPIAK+AAKLAVG+TLDEL NDITGG TPASFEP+IDYVVTK+P Sbjct: 301 NPRVSRSSALASKATGFPIAKIAAKLAVGFTLDELSNDITGGATPASFEPAIDYVVTKVP 360 Query: 361 RFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGFDPKVSLDDPEA 420 RFNFEKFAGANDRLTTQMKSVGEVMAIGRT QESLQKALRGLEVG G DP V ++D +A Sbjct: 361 RFNFEKFAGANDRLTTQMKSVGEVMAIGRTFQESLQKALRGLEVGVNGLDPIVDVEDNDA 420 Query: 421 LTKIRRELKDAGADRIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEVG 480 L++IR ELK+ GA+RIWYIADAFRAGLS+D +F LTNID WFLVQIEEL+ LE +V E G Sbjct: 421 LSRIRHELKEPGAERIWYIADAFRAGLSLDAIFKLTNIDPWFLVQIEELLSLENQVKEAG 480 Query: 481 ITGLNADFLRQLKRKGFADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCAAEFATDT 540 + ++ DFL +LKRKGF+DARLA L GV E+E+RKLR +++++PVYKRVDTCAAEF+TDT Sbjct: 481 MASMDKDFLYKLKRKGFSDARLAALMGVSESEMRKLRYRHEVYPVYKRVDTCAAEFSTDT 540 Query: 541 AYMYSTYEEECEANPSTDREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVN 600 AYMYSTYEEECEANPS +R+KIMVLGGGPNRIGQGIEFDYCCVHA+LALREDGYETIMVN Sbjct: 541 AYMYSTYEEECEANPS-NRDKIMVLGGGPNRIGQGIEFDYCCVHAALALREDGYETIMVN 599 Query: 601 CNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKLARALEAAGVP 660 CNPETVSTDYDTSDRLYFE VTLEDVLEIVRIE+PKGVIVQYGGQTPLKLAR LEAAGVP Sbjct: 600 CNPETVSTDYDTSDRLYFESVTLEDVLEIVRIEQPKGVIVQYGGQTPLKLARDLEAAGVP 659 Query: 661 VIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEIGYPLVVRPSYVL 720 +IGTSPDAIDRAEDRERFQ A++RL++KQP N TVT +E AV A+ IGYPLVVRPSYVL Sbjct: 660 IIGTSPDAIDRAEDRERFQQAIQRLEMKQPENDTVTTVEGAVISAERIGYPLVVRPSYVL 719 Query: 721 GGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMVLIGGIME 780 GGRAMEIVYDE DLRRYF AVSVSN +PVLLDHFLD+A EVD+DA+CDG V++G IME Sbjct: 720 GGRAMEIVYDEQDLRRYFNEAVSVSNASPVLLDHFLDNATEVDIDAVCDGTTVVVGAIME 779 Query: 781 HIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNNEVYLI 840 HIEQAGVHSGDS CSLP YTLSQEIQD MR+QV+KLA EL V GLMNVQFAV++N +Y+I Sbjct: 780 HIEQAGVHSGDSGCSLPPYTLSQEIQDQMREQVRKLAMELGVVGLMNVQFAVQDNTIYMI 839 Query: 841 EVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQGVTKEVIPPYYSVKEVVLPFNKF 900 EVNPRAARTVPFVSKATGVPLAK+AARVMAG+SL EQG TKEVIPP+YSVKEVVLPFNKF Sbjct: 840 EVNPRAARTVPFVSKATGVPLAKIAARVMAGQSLEEQGFTKEVIPPFYSVKEVVLPFNKF 899 Query: 901 PGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQLGSNSTMKKHGRALLSVREGDKERVVDL 960 PGVDPLLGPEMRSTGEVMGVG TFAEA+AKA+LG+ S + K GRALLSVR DK+RV DL Sbjct: 900 PGVDPLLGPEMRSTGEVMGVGATFAEAYAKAELGATSEVPKSGRALLSVRNSDKKRVADL 959 Query: 961 AAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTSGR 1020 AAKL++ G+E+DATHGTA+VLGEAGINPRLVNKVHEGRPHI DRIKN EYTYI+NTT GR Sbjct: 960 AAKLIELGYEIDATHGTAVVLGEAGINPRLVNKVHEGRPHILDRIKNDEYTYIVNTTEGR 1019 Query: 1021 RAIEDSRVIRRSALQYKVHYDTTLNGGFATAMALNADATEKVISVQEMHAQIK 1073 +AIEDSR +RR AL+YKV+Y TTLN FAT MA +AD+ V SVQE+H +IK Sbjct: 1020 QAIEDSRQLRRGALRYKVNYTTTLNAAFATCMAHSADSRTNVTSVQELHQRIK 1072 Lambda K H 0.318 0.135 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 3284 Number of extensions: 127 Number of successful extensions: 12 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 1073 Length of database: 1073 Length adjustment: 45 Effective length of query: 1028 Effective length of database: 1028 Effective search space: 1056784 Effective search space used: 1056784 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 58 (26.9 bits)
Align candidate 5210397 Shew_2838 (carbamoyl phosphate synthase large subunit (RefSeq))
to HMM TIGR01369 (carB: carbamoyl-phosphate synthase, large subunit (EC 6.3.5.5))
../bin/blast/fastacmd -i /tmp/list.30353.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.30353.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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