Align triose-phosphate isomerase (EC 5.3.1.1) (characterized)
to candidate 5210390 Shew_2831 Triose-phosphate isomerase (RefSeq)
Query= BRENDA::P0A858 (255 letters) >FitnessBrowser__PV4:5210390 Length = 260 Score = 243 bits (621), Expect = 2e-69 Identities = 118/259 (45%), Positives = 172/259 (66%), Gaps = 8/259 (3%) Query: 1 MRHPLVMGNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPEMYIDMAKREAE----- 55 +R P+V GNWK+NG+ + EL + +L + V + PP ++++ +++ + Sbjct: 3 LRRPMVAGNWKMNGTAQLAQELFTKFATKLQNDSA-EVVLCPPSIFLESVRQQLDANKEA 61 Query: 56 --GSHIMLGAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKF 113 G + +GAQN+ + GA+TGE S MLKD G +Y+IIGHSERR + E+ +++A+KF Sbjct: 62 LNGCLVRMGAQNLSQHDFGAYTGEVSGQMLKDSGCRYVIIGHSERRRMYGETSDIVAEKF 121 Query: 114 AVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIG 173 A ++ GLTP+LC+GE+ EA +T EV A ++D V++ G AF+ A+IAYEP+WA+G Sbjct: 122 AAAQKHGLTPILCVGESGPAREARRTFEVIAEELDVVIEKNGTMAFDNAIIAYEPLWAVG 181 Query: 174 TGKSATPAQAQAVHKFIRDHIAKVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVG 233 TGKSATP QAQ VH FIR +++V I E + I YGGSV SNAA+LFAQPD+DG L+G Sbjct: 182 TGKSATPEQAQEVHAFIRKRLSEVSPYIGENIRILYGGSVTPSNAADLFAQPDVDGGLIG 241 Query: 234 GASLKADAFAVIVKAAEAA 252 GASL + F + A +A Sbjct: 242 GASLNSTEFLSLCSIAMSA 260 Lambda K H 0.316 0.130 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 198 Number of extensions: 8 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 255 Length of database: 260 Length adjustment: 24 Effective length of query: 231 Effective length of database: 236 Effective search space: 54516 Effective search space used: 54516 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 47 (22.7 bits)
Align candidate 5210390 Shew_2831 (Triose-phosphate isomerase (RefSeq))
to HMM TIGR00419 (tpiA: triose-phosphate isomerase (EC 5.3.1.1))
../bin/blast/fastacmd -i /tmp/list.6315.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.6315.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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