Align fused aspartate kinase/homoserine dehydrogenase 2 (EC 2.7.2.4; EC 1.1.1.3) (characterized)
to candidate 5208005 Shew_0521 bifunctional aspartate kinase II/homoserine dehydrogenase II (RefSeq)
Query= ecocyc::ASPKINIIHOMOSERDEHYDROGII-MONOMER (810 letters) >FitnessBrowser__PV4:5208005 Length = 797 Score = 572 bits (1473), Expect = e-167 Identities = 342/804 (42%), Positives = 479/804 (59%), Gaps = 26/804 (3%) Query: 14 LHKFGGSSLADVKCYLRVAGIMAEYSQPDDMMVVSAAGSTTNQLINWLKLSQTDRLSAHQ 73 LHKFGGSSLAD CY RVA I+ + DD++VVSAAG +TN L L+L TD+L + Sbjct: 6 LHKFGGSSLADADCYRRVAHILLTHGHSDDLIVVSAAGKSTNFLYRLLELCDTDQLWQEE 65 Query: 74 VQQTLRRYQCDLISGLLPAEEADSLISAFVSDLERLAALLD-SGINDAVYAEVVGHGEVW 132 +Q L YQ +LI LL E+A SL +D +L +LL +ND +VV GE W Sbjct: 66 LQ-VLVSYQQNLIEQLLSNEQARSLRERLATDKSQLTSLLSLDELNDYQRNQVVSFGERW 124 Query: 133 SARLMSAVLNQQGLPAAWLDAREFLRAERAAQPQVDEGLSYPLLQQLLVQHPGKRLVVTG 192 S+ L++A+L + G+ A +DAR L A+ A PQ+ G S +Q LL HP +RLV+TG Sbjct: 125 SSCLLAALLRESGVAATDVDARTLLVADEGAVPQIRLGESRQKVQALLEAHPQERLVITG 184 Query: 193 FISRNNAGETVLLGRNGSDYSATQIGALAGVSRVTIWSDVAGVYSADPRKVKDACLLPLL 252 FI N G+T+LLGRNGSD+SAT + +LA + RVTIW+DV GV++ADP ++ DA LL + Sbjct: 185 FICANEQGDTLLLGRNGSDFSATLLASLADIERVTIWTDVEGVFNADPNRINDAKLLKSM 244 Query: 253 RLDEASELARLAAPVLHARTLQPVSGSEIDLQLRCSYTPDQGSTRIERVLASGTGARIVT 312 L EA+ LA L +PVLH RTLQP+ +E+ L +R SY P T I +S A +VT Sbjct: 245 SLTEANRLAHLGSPVLHNRTLQPLFDTEVSLAVRSSYAPHTDFTLIAPK-SSSASAPVVT 303 Query: 313 SHDDVCLIEFQVPASQDFKLAHKEIDQILK---RAQVRPLAV-GVHNDRQLLQFCYTSEV 368 S V L + E+ Q+L +A + PLA + + R L F + ++ Sbjct: 304 SLSSVSLFSLTISV---------ELPQLLACFAQAGLTPLAYWSLAHGRAELAFTHENQK 354 Query: 369 ADSALKILDEAGLP-GELRLRQGLALVAMVGAGVTRNPLHCHRFWQQLKGQPVEFTWQSD 427 A+ + L EL+LR L LVA+V A + L+ F + L + + Sbjct: 355 QAQAIFEAKRSELGIDELQLRDDLGLVALVSADAS---LYRRGFSRLLSREAHPLC---N 408 Query: 428 DGISLVAVLRTGPTESLIQGLHQSVFRAEKRIGLVLFGKGNIGSRWLELFAREQSTLSAR 487 DG+SLV ++ L Q +H+ KRIG++L G GNIG W++LF R + L+ Sbjct: 409 DGLSLVTLVPKAQVNLLTQKVHRRCAGPRKRIGVLLLGIGNIGEAWIDLFKRARPVLNKE 468 Query: 488 TGFEFVLAGVVDSRRSLLSYDGLDASRALAFFNDEAVEQDEESLFLWMRAHPYDDLVVLD 547 L G++ S+++LLS +D S F + LF ++A D+L+ LD Sbjct: 469 LEVSVELVGLLSSKKALLSETDIDLSSWQQAFEERGTGWQYTHLFEQLQALNCDELIALD 528 Query: 548 VTASQQLADQYLDFASHGFHVISANKLAGASDSNKYRQIHDAFEKTGRHWLYNATVGAGL 607 ++AS L QY +F + G H++SANKLAG+ Y+++ W YNA+ GAGL Sbjct: 529 ISASADLTLQYPEFFARGIHIVSANKLAGSGPLAFYQELKQQLGNRRLFWRYNASCGAGL 588 Query: 608 PINHTVRDLIDSGDTILSISGIFSGTLSWLFLQFDGSVPFTELVDQAWQQGLTEPDPRDD 667 P+ H + DL +SGD+I ++ GIFSGTL WLF +D PF+ELV +A G+TEPDPRDD Sbjct: 589 PVQHALNDLHNSGDSIEAVGGIFSGTLCWLFEHYDAKKPFSELVLEAKGLGITEPDPRDD 648 Query: 668 LSGKDVMRKLVILAREAGYNIEPDQVRVESLVPAHCEGGSIDHFFENGDELNEQMVQRLE 727 LSG+D+ RKL+ILARE GY+IE D + +ESLVP +D F + EL+ +M+Q+ + Sbjct: 649 LSGRDMQRKLLILAREIGYDIELDDIELESLVPTKLAEIPLDDFIKRMAELDGEMLQQYQ 708 Query: 728 AAREMGLVLRYVARFDANG---KARVGVEAVREDHPLASLLPCDNVFAIESRWYRDNPLV 784 AA E VLRYVA D+ KA+VG++ V HP A+L P DNVF I S +Y+DNPL+ Sbjct: 709 AAAEQNKVLRYVASLDSEQGQLKAKVGIQWVDRSHPYANLTPGDNVFVIRSDFYQDNPLI 768 Query: 785 IRGPGAGRDVTAGAIQSDINRLAQ 808 IRGPGAGR+VTA A+QSD+ ++ + Sbjct: 769 IRGPGAGREVTAAAVQSDLAQICR 792 Lambda K H 0.320 0.135 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 1467 Number of extensions: 76 Number of successful extensions: 5 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 810 Length of database: 797 Length adjustment: 41 Effective length of query: 769 Effective length of database: 756 Effective search space: 581364 Effective search space used: 581364 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 55 (25.8 bits)
Align candidate 5208005 Shew_0521 (bifunctional aspartate kinase II/homoserine dehydrogenase II (RefSeq))
to HMM TIGR00657 (aspartate kinase (EC 2.7.2.4))
../bin/blast/fastacmd -i /tmp/list.18256.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.18256.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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