Align amino-acid acetyltransferase (characterized)
to candidate 5211062 Shew_3478 N-acetylglutamate synthase (RefSeq)
Query= CharProtDB::CH_024150 (443 letters) >FitnessBrowser__PV4:5211062 Length = 440 Score = 584 bits (1506), Expect = e-171 Identities = 280/438 (63%), Positives = 351/438 (80%) Query: 5 RKTELVEGFRHSVPYINTHRGKTFVIMLGGEAIEHENFSSIVNDIGLLHSLGIRLVVVYG 64 R TELVEGFRHS Y+N HRGKTFV+MLGGEA+ F SI+NDI LLHSLGI++V+V+G Sbjct: 2 RTTELVEGFRHSASYVNAHRGKTFVVMLGGEALAQSQFRSIINDIALLHSLGIKIVLVHG 61 Query: 65 ARPQIDANLAAHHHEPLYHKNIRVTDAKTLELVKQAAGTLQLDITARLSMSLNNTPLQGA 124 ARPQID LAAH+ P Y+ +R++D ++ ++KQ G LQLDITARLSMSL+NTP+QGA Sbjct: 62 ARPQIDEALAAHNLAPEYYNGVRISDEESFRVIKQVVGGLQLDITARLSMSLSNTPMQGA 121 Query: 125 HINVVSGNFIIAQPLGVDDGVDYCHSGRIRRIDEDAIHRQLDSGAIVLMGPVAVSVTGES 184 INVVSGNF+IAQPLGVD+GVDYC SG++RRID + RQLD+ IVL+GPVA SVTGE Sbjct: 122 QINVVSGNFVIAQPLGVDNGVDYCLSGKVRRIDVAGLRRQLDNHGIVLLGPVAASVTGEC 181 Query: 185 FNLTSEEIATQLAIKLKAEKMIGFCSSQGVTNDDGDIVSELFPNEAQARVEAQEEKGDYN 244 FNLT+EE+ATQ+A+KLKA+KMIGF + +G+ + +G++++EL P +AQ + ++ ++ Sbjct: 182 FNLTAEEVATQIAVKLKADKMIGFSAKEGILDSNGEVIAELMPTDAQRILSELTDEDNWC 241 Query: 245 SGTVRFLRGAVKACRSGVRRCHLISYQEDGALLQELFSRDGIGTQIVMESAEQIRRATIN 304 GT FL+ ++ ACR+GV RCH +SY +DGALLQELFSRDGIGTQIV ESAE++RRATI Sbjct: 242 VGTRAFLQASIDACRNGVARCHFVSYLDDGALLQELFSRDGIGTQIVTESAERLRRATIA 301 Query: 305 DIGGILELIRPLEQQGILVRRSREQLEMEIDKFTIIQRDNTTIACAALYPFPEEKIGEMA 364 DIGG+L+LIRPLEQ G+LVRRSREQLEMEI++F +I+RD I CAALYPF E+ GE A Sbjct: 302 DIGGVLDLIRPLEQAGVLVRRSREQLEMEIEQFMLIERDGLVIGCAALYPFEEDNAGEFA 361 Query: 365 CVAVHPDYRSSSRGEVLLERIAAQAKQSGLSKLFVLTTRSIHWFQERGFTPVDIDLLPES 424 C+ VHPDYR + RG +LL+ I QAK G ++LF LTTRSIHWF E GF V++D LP Sbjct: 362 CLVVHPDYRDADRGSILLKNIIGQAKVRGYARLFALTTRSIHWFLEHGFQIVEVDALPNK 421 Query: 425 KKQLYNYQRKSKVLMADL 442 KKQLYNYQRKSK+L DL Sbjct: 422 KKQLYNYQRKSKILALDL 439 Lambda K H 0.319 0.136 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 594 Number of extensions: 12 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 443 Length of database: 440 Length adjustment: 32 Effective length of query: 411 Effective length of database: 408 Effective search space: 167688 Effective search space used: 167688 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 51 (24.3 bits)
Align candidate 5211062 Shew_3478 (N-acetylglutamate synthase (RefSeq))
to HMM TIGR01890 (argA: amino-acid N-acetyltransferase (EC 2.3.1.1))
../bin/blast/fastacmd -i /tmp/list.8712.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.8712.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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