Align 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (characterized)
to candidate CA265_RS15850 CA265_RS15850 3-isopropylmalate dehydrogenase
Query= BRENDA::Q9SA14 (404 letters) >FitnessBrowser__Pedo557:CA265_RS15850 Length = 363 Score = 353 bits (906), Expect = e-102 Identities = 184/362 (50%), Positives = 253/362 (69%), Gaps = 9/362 (2%) Query: 45 NITLLPGDGIGPEVISVAKNVLQKAGFLQGLEFDFQEMPFGGAALDLVGVPLPEETSTAA 104 NI ++PGDGIGPEV + K L+K + G EF F+E G AA+++ G PLP+ET A Sbjct: 4 NILVIPGDGIGPEVTTWGKAALEKIAEIFGHEFAFEEALMGHAAIEVTGEPLPDETLEKA 63 Query: 105 KQSDAILLGAIGGYKWDKNEK-HLRPEMGLLNIRRDLNVFANLRPATVLPQLVDASTLKK 163 +QSDAIL GAIG K+D + +RPE GLL IR++L +FANLRP + +L+ AS++K Sbjct: 64 RQSDAILFGAIGHAKYDNDPSLKVRPEQGLLKIRKELGLFANLRPILLFDELLQASSIKP 123 Query: 164 EVAQGVDMMIVRELTGGIYFGEPRGITINENGEEVGFNTEIYAAHEIDRIARVAFETARK 223 E+ +G D++ RELTG +YFGE + IY +E++RIA A++ A++ Sbjct: 124 EILRGTDILFFRELTGDVYFGEKT----RSEDRNTASDLMIYHRYEVERIAHKAYQAAQQ 179 Query: 224 RRGKLCSVDKANVLDASILWRKRVTALASEYPDVELSHMYVDNAAMQLVRDPKQFDTIVT 283 R +LCSVDKANVL++S LWR+ V +A +YPDVE HM++DNAAMQL+++PK+FD ++T Sbjct: 180 RNKRLCSVDKANVLESSRLWRETVQEIAKQYPDVETEHMFIDNAAMQLIKNPKKFDVVLT 239 Query: 284 NNIFGDILSDEASMITGSIGMLPSASLGESGPGLFEPIHGSAPDIAGQDKANPLATILSA 343 N+FGDIL+DEAS I GS+GML SAS+GES G FEPIHGSA DIAG+D ANPLA+ILSA Sbjct: 240 ANLFGDILTDEASQIAGSMGMLASASVGES-TGFFEPIHGSAHDIAGKDLANPLASILSA 298 Query: 344 AMLLKYGLGEEKAAKMIEDAVVDALNKGFRTGDIYSPGN---KLVGCKEMGEEVLKSVDS 400 A++L+ G G ++ AK++ D + L +GFRT DI K++G EMG+ VLK + Sbjct: 299 ALMLEIGFGLKEEAKLLVDTIDQVLKEGFRTHDIADQSTNRFKVLGTAEMGKLVLKFLSQ 358 Query: 401 KV 402 K+ Sbjct: 359 KL 360 Lambda K H 0.317 0.136 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 394 Number of extensions: 14 Number of successful extensions: 5 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 404 Length of database: 363 Length adjustment: 30 Effective length of query: 374 Effective length of database: 333 Effective search space: 124542 Effective search space used: 124542 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.9 bits)
Align candidate CA265_RS15850 CA265_RS15850 (3-isopropylmalate dehydrogenase)
to HMM TIGR00169 (leuB: 3-isopropylmalate dehydrogenase (EC 1.1.1.85))
../bin/blast/fastacmd -i /tmp/list.11246.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.11246.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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