Align Acetylornithine deacetylase; AO; Acetylornithinase; EC 3.5.1.16; N-acetylornithinase; NAO (uncharacterized)
to candidate GFF997 PGA1_c10140 acetylornithine deacetylase ArgE
Query= curated2:O68873 (380 letters) >FitnessBrowser__Phaeo:GFF997 Length = 388 Score = 185 bits (470), Expect = 2e-51 Identities = 134/383 (34%), Positives = 194/383 (50%), Gaps = 38/383 (9%) Query: 1 MSDTLPALRATLTELVAMDTTSFRPNVPLIDYAQARLEAAGFSAERQKFLDDAGVEKVNL 60 M+D L L +T+L++ T S N+PL+D+ + L + G +A R ++D K + Sbjct: 1 MADQLTPLEI-MTKLISFPTVSSETNLPLVDWVEGYLASHGITAHR--WVDPDQPHKAAV 57 Query: 61 VAVKGGSGSGRAALALVGHSDCVPYDAA-W-TDALRLTEKDGRLYARGACDTKGFIACAL 118 A G G A+ L GH+D VP + W +D + E+DG+ + RG CD KGF A A+ Sbjct: 58 FAHVGPDVEG--AVVLSGHTDVVPIEGQPWDSDPFTVVERDGKYFGRGTCDMKGFDALAI 115 Query: 119 HAALNAEQ--LKAPLMVVLTADEEVGLTGAKKLVEAG---LGRARHAIVGEPTRLIPVRA 173 A + A + PL + L+ DEEVG TGA ++ A L + IVGEP+ + PV Sbjct: 116 WALVAAHHRGVARPLQLALSFDEEVGCTGAPPMIVAMQDVLPKGSCVIVGEPSVMRPVTG 175 Query: 174 NKGYCLAEVEVRGKEGHSAYPDSGASAIFRAGRFL-----QRLEHLALTVLREDLDEGFQ 228 +KG + G E HS+ +G SAI + R + + E++A T +D+ F Sbjct: 176 HKGGIGYSTHLVGFEVHSSLMHTGVSAIMQGARLIDWANARNAENMAKTP--DDVAALFT 233 Query: 229 PPFTTVNVGVIQGGKAKNVIPGACRFVVEWRPIPGQPPERVSQLLETIRQELVRDEPAFE 288 PPFTT +VG+I GG A N+ CRFV+++R +PG+ E VRD E Sbjct: 234 PPFTTCHVGMINGGTAHNITAKDCRFVMDFRVVPGESAAE----WEAAYLAKVRD---IE 286 Query: 289 AQIRVVRTDRGVNTRADAEVVRFLAEASG------------NAPETVSFGTEAPQMTELG 336 A+++VV D ++ V + E G N VS+GTEA Q E G Sbjct: 287 AEMQVVHPDTRIDVSKKFNVPGLVPEVEGEAETLVRALTGDNGTHVVSYGTEAGQFQEAG 346 Query: 337 AEAVVFGPGDIRVAHQTGEYVPV 359 AV+ GPGDI AHQ EY+ V Sbjct: 347 YSAVICGPGDIAQAHQPNEYIDV 369 Lambda K H 0.319 0.136 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 394 Number of extensions: 19 Number of successful extensions: 6 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 380 Length of database: 388 Length adjustment: 30 Effective length of query: 350 Effective length of database: 358 Effective search space: 125300 Effective search space used: 125300 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (23.9 bits)
Align candidate GFF997 PGA1_c10140 (acetylornithine deacetylase ArgE)
to HMM TIGR01892 (argE: acetylornithine deacetylase (ArgE) (EC 3.5.1.16))
../bin/blast/fastacmd -i /tmp/list.13556.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.13556.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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