Align Aspartate-semialdehyde dehydrogenase 2; ASA dehydrogenase 2; ASADH 2; Aspartate-beta-semialdehyde dehydrogenase 2; EC 1.2.1.11 (characterized)
to candidate GFF3097 PGA1_c31480 aspartate-semialdehyde dehydrogenase Asd
Query= SwissProt::P23247 (337 letters) >FitnessBrowser__Phaeo:GFF3097 Length = 340 Score = 319 bits (818), Expect = 6e-92 Identities = 170/335 (50%), Positives = 231/335 (68%), Gaps = 6/335 (1%) Query: 5 FNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVEEFDW 64 + V I GATG VG ML +L ER+FPVDE+ +LAS +S G F KT+ Q+++ FD+ Sbjct: 3 YRVVIAGATGNVGREMLNILAERQFPVDEIAVLASRKSLGTEVTFGDKTLTTQDLDTFDF 62 Query: 65 SQVHIALFSAGGELSAKWAPIAAEAGVVVIDNTSHFRYDYDIPLVVPEVNPEAIAEFRNR 124 + +ALF+ G + + K+AP AA AG VVIDN+S +RYD+D+PL+VPEVNP+A+ + + Sbjct: 63 AGWDMALFAVGSDATKKYAPKAAAAGCVVIDNSSLYRYDHDVPLIVPEVNPQAVHGYAKK 122 Query: 125 NIIANPNCSTIQMLVALKPIYDAVGIERINVTTYQSVSGAGKAGIDELAGQTAKLLN-GY 183 NIIANPNCST QM+VALKP++D I+R+ V+TYQSVSG+GK IDEL QT + N Sbjct: 123 NIIANPNCSTAQMVVALKPLHDRAKIKRVVVSTYQSVSGSGKDAIDELWDQTKAVYNPTQ 182 Query: 184 PAETNTFSQQIAFNCIPQIDQFMDNGYTKEEMKMVWETQKIFNDPSIMVNPTCVRVPVFY 243 + +++QIAFN IP ID F+D+G TKEE KMV ET+KI DPSI V TCVRVPVF Sbjct: 183 DVPPSVYTKQIAFNVIPHIDVFLDDGSTKEEWKMVAETKKII-DPSIKVTATCVRVPVFV 241 Query: 244 GHAEAVHVETRAPIDAEQVMDMLEQTDGIELF---RGADFPTQVRDAGGKDHVLVGRVRN 300 GH+EA+++E +D ++ D+L + GI + + T V + G + R+R Sbjct: 242 GHSEAINIEFEDFLDEDEARDILREAPGIMVIDKREDGGYVTPV-ECVGDFATFISRIRQ 300 Query: 301 DISHHSGINLWVVADNVRKGAATNAVQIAELLVRD 335 D + +G+NLW V+DN+RKGAA NAVQIAELL R+ Sbjct: 301 DSTLDNGLNLWCVSDNLRKGAALNAVQIAELLGRE 335 Lambda K H 0.319 0.135 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 356 Number of extensions: 15 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 337 Length of database: 340 Length adjustment: 28 Effective length of query: 309 Effective length of database: 312 Effective search space: 96408 Effective search space used: 96408 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 49 (23.5 bits)
Align candidate GFF3097 PGA1_c31480 (aspartate-semialdehyde dehydrogenase Asd)
to HMM TIGR01296 (asd: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11))
../bin/blast/fastacmd -i /tmp/list.27057.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.27057.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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