Align Phenylalanine 4-monooxygenase (EC 1.14.16.1) (characterized)
to candidate 6938101 Sama_2222 phenylalanine 4-monooxygenase (RefSeq)
Query= reanno::MR1:200831 (271 letters) >FitnessBrowser__SB2B:6938101 Length = 263 Score = 416 bits (1068), Expect = e-121 Identities = 200/258 (77%), Positives = 230/258 (89%), Gaps = 1/258 (0%) Query: 11 YVARSADDSGYIHYPQEEHDIWRQLYARQAVNLPGRACKEYLQGLDALAMPKDRIPQLAE 70 YVAR D G I YP +E++IW +LYARQAVNLPGRAC+EYL GL+ LA+PKDR+PQLAE Sbjct: 5 YVARKPDAHGVIAYPDQENEIWAELYARQAVNLPGRACQEYLDGLERLALPKDRVPQLAE 64 Query: 71 IDKVLMATTGWKTADVPALISFGRFFELLANKEFPVATFIRRKEEFDYLQEPDIFHEIFG 130 +D+VL+ TTGWKTA VPALISF RFFELLA+++FPVATFIR +EEFDYLQEPDIFHEIFG Sbjct: 65 VDEVLLDTTGWKTAAVPALISFERFFELLASRQFPVATFIRSREEFDYLQEPDIFHEIFG 124 Query: 131 HCPLLTNPSFAHFSHMYGQLGLNASKEDRVFLARLYWFTVEFGLLKPQEGELCIYGGGIL 190 HCPLLTNP+FA+FSH+YG+LGL A+KE+RV+LARLYWFTVEFGLLKP++GEL IYGGGIL Sbjct: 125 HCPLLTNPAFANFSHIYGKLGLAATKEERVYLARLYWFTVEFGLLKPRDGELRIYGGGIL 184 Query: 191 SSPGETLYAMESQVPERKPFDLLDVLRTPYRIDIMQPIYYVIEHIDVLDEIAKMDIMAYV 250 SSPGETLYAM + P RKPFDLLDVLRTPYRIDIMQP+Y+ IEHID LDEIA+MDIM V Sbjct: 185 SSPGETLYAMGDK-PLRKPFDLLDVLRTPYRIDIMQPVYFEIEHIDFLDEIARMDIMQSV 243 Query: 251 AKARQLGLFAPKYPPKAK 268 +ARQLGL AP + PKAK Sbjct: 244 TRARQLGLHAPLFEPKAK 261 Lambda K H 0.323 0.140 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 323 Number of extensions: 7 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 271 Length of database: 263 Length adjustment: 25 Effective length of query: 246 Effective length of database: 238 Effective search space: 58548 Effective search space used: 58548 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 47 (22.7 bits)
Align candidate 6938101 Sama_2222 (phenylalanine 4-monooxygenase (RefSeq))
to HMM TIGR01267 (phhA: phenylalanine-4-hydroxylase (EC 1.14.16.1))
../bin/blast/fastacmd -i /tmp/list.27745.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.27745.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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