GapMind for Amino acid biosynthesis

 

Alignments for a candidate for argC in Synechococcus elongatus PCC 7942

Align N-acetyl-gamma-glutamyl-phosphate reductase; AGPR; N-acetyl-glutamate semialdehyde dehydrogenase; NAGSA dehydrogenase; EC 1.2.1.38 (characterized)
to candidate Synpcc7942_1433 Synpcc7942_1433 N-acetyl-gamma-glutamyl-phosphate reductase

Query= SwissProt::Q07906
         (345 letters)



>FitnessBrowser__SynE:Synpcc7942_1433
          Length = 352

 Score =  285 bits (730), Expect = 9e-82
 Identities = 148/344 (43%), Positives = 209/344 (60%), Gaps = 2/344 (0%)

Query: 4   VAIIGATGYSGAELFRLLYGHPHVSQCDVFSSSQDGIHLSESFPHVGAVDGAVLHKLEIE 63
           V IIGA+GY G +L RLL  HP +    +      G   +E +PH+G      +  ++++
Sbjct: 9   VGIIGASGYGGVQLVRLLQDHPQLEVAYLGGDRSAGKEFAELYPHLGPHLNLTIEAIDVD 68

Query: 64  ALA-KYDAVFFATPPGVSGEWAPALVDRGVKVIDLSGDFRLKDGAVYAQWYGREAAPSAY 122
            +A +  AVF + P G++ + APAL++RG KV+DLS D+R  D   YA WYG +   +A 
Sbjct: 69  RIAERCAAVFLSLPNGLAYDLAPALLERGCKVLDLSADYRFHDLKTYALWYGGDRQDAAV 128

Query: 123 LERAVYGLTEWNREAVRGAVLLSNPGCYPTATLLGLAPLVKEGLIKEDSIIVDAKSGVSG 182
              A+YGL E  R  +  A L+  PGCYPTA+LL LAP +K+GLI  D+I++DAKSG SG
Sbjct: 129 AHTAIYGLPELYRNRIANAQLIGCPGCYPTASLLALAPALKQGLIDPDTIVIDAKSGTSG 188

Query: 183 AGRKAGLGTHFSEVNENVKIYKVNAHQHIPEIEQALQTWNEAVAPITFSTHLIPMTRGIM 242
           AGR+A      +E   +V  Y V  H+H PEIEQ     +     + F+ HL+PM RGI 
Sbjct: 189 AGRQAKTNALLAEAGNSVGAYGVARHRHTPEIEQICSDLSGHEVLLQFTPHLMPMVRGIH 248

Query: 243 ATIYAKAKQ-SISPNDLVDLYKTSYEGSPFVRIRQLGQFPATKDVYGSNYCDIGLAYDER 301
           ATIYAK +  +++  D + +Y+  Y  +P V++   G +P TK   G+N C +GL  D R
Sbjct: 249 ATIYAKLRDPNLTTEDCLTVYQAFYRNAPMVKVLTHGTYPQTKWAAGTNLCYLGLEVDAR 308

Query: 302 TERVTVVSVIDNLMKGAAGQAVQNFNLMMGWDEAEGLRSLPIYP 345
           T R+ ++S IDNL+KG AGQA+Q  NLM GW+E  GL +L  YP
Sbjct: 309 TGRIVLLSAIDNLIKGQAGQAIQCLNLMQGWEEGLGLPTLCYYP 352


Lambda     K      H
   0.318    0.135    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 354
Number of extensions: 11
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 352
Length adjustment: 29
Effective length of query: 316
Effective length of database: 323
Effective search space:   102068
Effective search space used:   102068
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)

Align candidate Synpcc7942_1433 Synpcc7942_1433 (N-acetyl-gamma-glutamyl-phosphate reductase)
to HMM TIGR01850 (argC: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38))

Software error:

../bin/blast/fastacmd -i /tmp/list.14045.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.14045.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.