Align N-acetyl-gamma-glutamyl-phosphate reductase; AGPR; N-acetyl-glutamate semialdehyde dehydrogenase; NAGSA dehydrogenase; EC 1.2.1.38 (characterized)
to candidate Synpcc7942_1433 Synpcc7942_1433 N-acetyl-gamma-glutamyl-phosphate reductase
Query= SwissProt::Q07906 (345 letters) >FitnessBrowser__SynE:Synpcc7942_1433 Length = 352 Score = 285 bits (730), Expect = 9e-82 Identities = 148/344 (43%), Positives = 209/344 (60%), Gaps = 2/344 (0%) Query: 4 VAIIGATGYSGAELFRLLYGHPHVSQCDVFSSSQDGIHLSESFPHVGAVDGAVLHKLEIE 63 V IIGA+GY G +L RLL HP + + G +E +PH+G + ++++ Sbjct: 9 VGIIGASGYGGVQLVRLLQDHPQLEVAYLGGDRSAGKEFAELYPHLGPHLNLTIEAIDVD 68 Query: 64 ALA-KYDAVFFATPPGVSGEWAPALVDRGVKVIDLSGDFRLKDGAVYAQWYGREAAPSAY 122 +A + AVF + P G++ + APAL++RG KV+DLS D+R D YA WYG + +A Sbjct: 69 RIAERCAAVFLSLPNGLAYDLAPALLERGCKVLDLSADYRFHDLKTYALWYGGDRQDAAV 128 Query: 123 LERAVYGLTEWNREAVRGAVLLSNPGCYPTATLLGLAPLVKEGLIKEDSIIVDAKSGVSG 182 A+YGL E R + A L+ PGCYPTA+LL LAP +K+GLI D+I++DAKSG SG Sbjct: 129 AHTAIYGLPELYRNRIANAQLIGCPGCYPTASLLALAPALKQGLIDPDTIVIDAKSGTSG 188 Query: 183 AGRKAGLGTHFSEVNENVKIYKVNAHQHIPEIEQALQTWNEAVAPITFSTHLIPMTRGIM 242 AGR+A +E +V Y V H+H PEIEQ + + F+ HL+PM RGI Sbjct: 189 AGRQAKTNALLAEAGNSVGAYGVARHRHTPEIEQICSDLSGHEVLLQFTPHLMPMVRGIH 248 Query: 243 ATIYAKAKQ-SISPNDLVDLYKTSYEGSPFVRIRQLGQFPATKDVYGSNYCDIGLAYDER 301 ATIYAK + +++ D + +Y+ Y +P V++ G +P TK G+N C +GL D R Sbjct: 249 ATIYAKLRDPNLTTEDCLTVYQAFYRNAPMVKVLTHGTYPQTKWAAGTNLCYLGLEVDAR 308 Query: 302 TERVTVVSVIDNLMKGAAGQAVQNFNLMMGWDEAEGLRSLPIYP 345 T R+ ++S IDNL+KG AGQA+Q NLM GW+E GL +L YP Sbjct: 309 TGRIVLLSAIDNLIKGQAGQAIQCLNLMQGWEEGLGLPTLCYYP 352 Lambda K H 0.318 0.135 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 354 Number of extensions: 11 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 345 Length of database: 352 Length adjustment: 29 Effective length of query: 316 Effective length of database: 323 Effective search space: 102068 Effective search space used: 102068 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 49 (23.5 bits)
Align candidate Synpcc7942_1433 Synpcc7942_1433 (N-acetyl-gamma-glutamyl-phosphate reductase)
to HMM TIGR01850 (argC: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38))
../bin/blast/fastacmd -i /tmp/list.14045.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.14045.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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