Align 3-isopropylmalate dehydratase large subunit 1; Alpha-IPM isomerase 1; IPMI 1; Isopropylmalate isomerase 1; EC 4.2.1.33 (characterized)
to candidate Synpcc7942_1898 Synpcc7942_1898 isopropylmalate isomerase large subunit
Query= SwissProt::P15717 (466 letters) >FitnessBrowser__SynE:Synpcc7942_1898 Length = 468 Score = 493 bits (1269), Expect = e-144 Identities = 251/462 (54%), Positives = 320/462 (69%), Gaps = 2/462 (0%) Query: 4 TLYEKLFDAHVVFEAPNETPLLYIDRHLVHEVTSPQAFDGLRAHHRPVRQPGKTFATMDH 63 TL++K++D H V P+ L+I HL+HEVTSPQAF LR V+ PG+T AT+DH Sbjct: 5 TLFDKVWDLHTVATLPSGQTQLFIGLHLIHEVTSPQAFSMLRDRGLTVKFPGRTVATVDH 64 Query: 64 NVSTQTKDINASGEMARIQMQELIKNCNEFGVELYDLNHPYQGIVHVMGPEQGVTLPGMT 123 V T+ + + +A + L +NC E G+ Y++ QGIVHV+ PEQG+T PGMT Sbjct: 65 IVPTENQARPFADSLAEEMIVTLERNCRENGIRFYNIGSGSQGIVHVIAPEQGLTQPGMT 124 Query: 124 IVCGDSHTATHGAFGALAFGIGTSEVEHVLATQTLKQGRAKTMKIEVTGNAAPGITAKDI 183 I CGDSHT+THGAFGA+AFGIGTS+V VLA+QTL + K KIEV G PG+ AKD+ Sbjct: 125 IACGDSHTSTHGAFGAIAFGIGTSQVRDVLASQTLALSKLKVRKIEVNGELQPGVYAKDV 184 Query: 184 VLAIIGKTGSAGGTGHVVEFCGDAIRALSMEGRMTLCNMAIEMGAKAGLVAPDETTFNYV 243 +L II K G GG G+ EF G A+SME RMT+CNMAIE GA+ G V PD+ T++Y+ Sbjct: 185 ILHIIRKLGVKGGVGYAYEFAGSTFAAMSMEERMTVCNMAIEGGARCGYVNPDQITYDYL 244 Query: 244 KGRLHAPKGRDFDEAVEYWKTLKTDDGATFDTVVALRAEEIAPQVTWGTNPGQVISVTDI 303 +GR AP+G +D A+ +W++L+++ A +D VV A EIAP VTWG PGQ I +T+ Sbjct: 245 QGREFAPQGEAWDRAIAWWESLRSEADAEYDDVVVFDAAEIAPTVTWGITPGQGIGITET 304 Query: 304 IPDPASFSDPVERASAEKALAYMGLQPGVPLTDVAIDKVFIGSCTNSRIEDLRAAAEVAK 363 IP P S D +RA A +A +YM L+PG PL +D FIGSCTN R+ DLR AA+VA+ Sbjct: 305 IPTPDSLLDE-DRAVAAEAYSYMDLEPGAPLQGTKVDVCFIGSCTNGRLSDLREAAKVAQ 363 Query: 364 GRKVAPGVQALVVPGSGPVKAQAEAEGLDKIFIEAGFEWRLPGCSMCLAMNNDRLNPGER 423 GRKVA G++A VVPGS VK QAEAEGLD+IF AGFEWR GCSMCLAMN D+L + Sbjct: 364 GRKVAAGIKAFVVPGSERVKQQAEAEGLDQIFTAAGFEWRQAGCSMCLAMNPDKLEGRQI 423 Query: 424 CASTSNRNFEGRQG-RGGRTHLVSPAMAAAAAVTGHFADIRS 464 AS+SNRNF+GRQG GRT L+SPAM AAAA+ G D+R+ Sbjct: 424 SASSSNRNFKGRQGSASGRTLLMSPAMVAAAAIAGEVTDVRN 465 Lambda K H 0.318 0.134 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 712 Number of extensions: 29 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 466 Length of database: 468 Length adjustment: 33 Effective length of query: 433 Effective length of database: 435 Effective search space: 188355 Effective search space used: 188355 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 51 (24.3 bits)
Align candidate Synpcc7942_1898 Synpcc7942_1898 (isopropylmalate isomerase large subunit)
to HMM TIGR00170 (leuC: 3-isopropylmalate dehydratase, large subunit (EC 4.2.1.33))
../bin/blast/fastacmd -i /tmp/list.31235.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.31235.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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