Align 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) (characterized)
to candidate Synpcc7942_2136 Synpcc7942_2136 dihydrodipicolinate reductase
Query= BRENDA::P9WP23 (245 letters) >FitnessBrowser__SynE:Synpcc7942_2136 Length = 273 Score = 207 bits (527), Expect = 2e-58 Identities = 117/268 (43%), Positives = 164/268 (61%), Gaps = 29/268 (10%) Query: 3 VGVLGAKGKVGATMVRAVAAADDLTL------SAELDAGD--------PLSLLTDGNTE- 47 V V GA GK+G ++A+AAADD+TL SA++ D PL + + E Sbjct: 7 VVVNGATGKMGRETIKAIAAADDVTLVGAIARSADVQGQDIGEIVGLGPLEVPVTNDLEG 66 Query: 48 ------------VVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAKP 95 VV+DFTHPD + N+ I G+ VVGTTG E+ Q++ + K Sbjct: 67 MLCLASQEREVPVVVDFTHPDCIYDNVRKAIAYGVRPVVGTTGLNNEQLQELAEF-AEKA 125 Query: 96 NTSVLIAPNFAIGAVLSMHFAKQAARFFDSAEVIELHHPHKADAPSGTAARTAKLIAEAR 155 + L+ PNF+IG VL M A QA+RF+D E++ELHH KADAPSGTA +TA+++AE Sbjct: 126 SVGCLVIPNFSIGMVLLMQAAIQASRFYDHVEILELHHDQKADAPSGTAIKTAQMLAELG 185 Query: 156 KGLPPNPDATSTSLPGARGA-DVDGIPVHAVRLAGLVAHQEVLFGTEGETLTIRHDSLDR 214 K P ++PGARGA + I +H+VRL GL+AH+EV+FG GE LT+RHD++DR Sbjct: 186 KTFNPPKVTEKETMPGARGAVGPENIRIHSVRLPGLIAHEEVIFGAPGEILTLRHDTMDR 245 Query: 215 TSFVPGVLLAVRRIAERPGLTVGLEPLL 242 + ++PGVLLAVR++ + GL GL+ +L Sbjct: 246 SCYMPGVLLAVRKVRQLTGLIYGLDRIL 273 Lambda K H 0.319 0.135 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 200 Number of extensions: 12 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 245 Length of database: 273 Length adjustment: 24 Effective length of query: 221 Effective length of database: 249 Effective search space: 55029 Effective search space used: 55029 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 47 (22.7 bits)
Align candidate Synpcc7942_2136 Synpcc7942_2136 (dihydrodipicolinate reductase)
to HMM TIGR00036 (dapB: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8))
../bin/blast/fastacmd -i /tmp/list.21284.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.21284.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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