Align Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; Asp/Glu-ADT subunit B; EC 6.3.5.- (characterized)
to candidate GFF834 PS417_04235 glutamyl-tRNA amidotransferase
Query= SwissProt::Q9RF06 (475 letters) >FitnessBrowser__WCS417:GFF834 Length = 481 Score = 457 bits (1175), Expect = e-133 Identities = 225/481 (46%), Positives = 331/481 (68%), Gaps = 9/481 (1%) Query: 1 MHFETVIGLEVHVELKTDSKMFSPSPAHFGAEPNSNTNVIDLAYPGVLPVVNKRAVDWAM 60 M +E VIGLE+H +L T SK+FS S FG+EPN+ +++DL PGVLPV+N+ AV A+ Sbjct: 1 MQWEVVIGLEIHTQLATQSKIFSGSATTFGSEPNTQASLVDLGMPGVLPVLNQEAVRMAV 60 Query: 61 RAAMALNMEIATESKFDRKNYFYPDNPKAYQISQFDQPIGENGYIDIEV-DGETKRIGIT 119 +A++ EI + F RKNYFYPD PK YQISQ + PI G++DI + DG KR+G+T Sbjct: 61 MFGLAIDAEIGQHNVFARKNYFYPDLPKGYQISQMELPIVGKGHLDIPLEDGTIKRVGVT 120 Query: 120 RLHMEEDAGKSTHKGEY---SLVDLNRQGTPLIEIVSEPDIRSPKEAYAYLEKLRSIIQY 176 R H+EEDAGKS H+ E+ + +DLNR GTPL+EIVSEPD+RS KEA AY++ + ++++Y Sbjct: 121 RAHLEEDAGKSLHE-EFPGATGIDLNRAGTPLLEIVSEPDMRSAKEAVAYVKTIHALVRY 179 Query: 177 TGVSDVKMEEGSLRCDANISLRPYGQEKFGTKAELKNLNSFNYVRKGLEYEEKRQEEELL 236 G+ D M EGSLRCD N+S+RP GQ +FGT+ E+KN+NSF ++ K + E +RQ E + Sbjct: 180 LGICDGNMAEGSLRCDCNVSIRPKGQVEFGTRCEIKNVNSFRFIEKAINSEVRRQIELIE 239 Query: 237 SGGEIGQETRRFDESTGKTILMRVKEGSDDYRYFPEPDIVPLYIDDAWKERVRQTIPELP 296 GG++ Q+TR +D + +T MR KE ++DYRYFP+PD++P+ ++D++ +R T+PELP Sbjct: 240 DGGKVIQQTRLYDPNKDETRAMRSKEEANDYRYFPDPDLLPVVLEDSFLNDIRATLPELP 299 Query: 297 DERKAKYVNELGLPAYDAHVLTLTKEMSDFFESTIEHGADVKLTSNWLMGGVNEYLNKNQ 356 +++ ++ + GL YDA VL ++E +++FE + D KL +NW+M + LNK Sbjct: 300 QQKRERFQAQFGLSVYDASVLASSREQANYFEKVVSIAGDAKLAANWVMVELGSLLNKQG 359 Query: 357 VELLDTKLTPENLAGMIKLIEDGTMSSKIAKKVFPELAAKGGNAKQIMEDNGLVQISDEA 416 +E+ + ++ E L GM+ I+D T+S KIAK VF +A+ G+A +I+E GL Q++D Sbjct: 360 LEIDEAPVSAEQLGGMLLRIKDNTISGKIAKTVFEAMASGEGSADEIIEKRGLKQVTDSG 419 Query: 417 TLLKFVNEALDNNEQSVEDYKNG----KGKAMGFLVGQIMKASKGQANPQLVNQLLKQEL 472 + ++E L N + VE Y+ +GK GF VGQ MKASKG+ANPQ VN+LLK +L Sbjct: 420 AISAVLDEMLAANAEQVEQYRAADEAKRGKMFGFFVGQAMKASKGKANPQQVNELLKSKL 479 Query: 473 D 473 + Sbjct: 480 E 480 Lambda K H 0.313 0.133 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 636 Number of extensions: 24 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 475 Length of database: 481 Length adjustment: 34 Effective length of query: 441 Effective length of database: 447 Effective search space: 197127 Effective search space used: 197127 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 51 (24.3 bits)
Align candidate GFF834 PS417_04235 (glutamyl-tRNA amidotransferase)
to HMM TIGR00133 (gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit (EC 6.3.5.-))
../bin/blast/fastacmd -i /tmp/list.2350.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.2350.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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