Align Anthranilate phosphoribosyltransferase; EC 2.4.2.18 (characterized)
to candidate GFF5019 PS417_25715 anthranilate phosphoribosyltransferase
Query= SwissProt::Q8PD71 (345 letters) >FitnessBrowser__WCS417:GFF5019 Length = 349 Score = 286 bits (731), Expect = 7e-82 Identities = 158/335 (47%), Positives = 210/335 (62%), Gaps = 4/335 (1%) Query: 8 ALQRTIEHREIFHDEMVDLMRQIMRGEVSDAMVSAILTGLRVKKETIGEIAGAATVMREF 67 AL R + H ++ EM D+MR+IM G+ +DA + A + +R+K E+I EI GA +VMRE Sbjct: 6 ALSRIVGHLDLSTAEMSDVMREIMTGQCTDAQIGAFMMAMRMKSESIDEIVGAVSVMREL 65 Query: 68 SRRVEVTDRRHMVDIVGTGGDGSHTFNISTCAMFVAAAGGAKVAKHGNRSVSSKSGSADA 127 + +VE+ +VD+VGTGGDG++ FN+ST + FV AA G VAKHGNR+VS KSGSAD Sbjct: 66 ADKVELKTLDGVVDVVGTGGDGANIFNVSTASSFVVAAAGCTVAKHGNRAVSGKSGSADL 125 Query: 128 LEALGAVIELQPEQVAASLAQTGIGFMYAPVHHPAMKVVAPVRREMGVRTIFNILGPLTN 187 LEA G + L P QVA + GIGFM+A HH AMK A R+++G+RT+FN+LGPLTN Sbjct: 126 LEAAGIYLNLTPVQVARCIDSVGIGFMFAQSHHGAMKHAAGPRKDLGLRTLFNMLGPLTN 185 Query: 188 PAGSPNILMGVFHPDLVGIQARVLQELGAERALVVWGRDGMDELSLGAGTLVGELRDGQV 247 PAG + ++GVF L A VLQ LG++ LVV +DG+DE SL A T V EL++ QV Sbjct: 186 PAGVKHQVVGVFSQALCRPLAEVLQRLGSKHVLVVHSKDGLDEFSLAAPTFVAELKNDQV 245 Query: 248 HEYEVHPEDFGIAMSASRNLKVADAAESRAMLLQVLDNVP----GPALDIVALNAGAALY 303 EY V PED G+ + L V A S ++ L A +++ LNAGAALY Sbjct: 246 TEYWVEPEDLGMKSQSLHGLAVESPAASLELIRDALGRRKTENGQKAAEMIVLNAGAALY 305 Query: 304 VAGVADSIADGIVRARQVLADGSARACLDAYVAFT 338 A A S+ +G+ A L G AR L+ AFT Sbjct: 306 AADHAYSLKEGVALAHDALHTGLAREKLEELGAFT 340 Lambda K H 0.320 0.134 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 304 Number of extensions: 15 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 345 Length of database: 349 Length adjustment: 29 Effective length of query: 316 Effective length of database: 320 Effective search space: 101120 Effective search space used: 101120 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 49 (23.5 bits)
Align candidate GFF5019 PS417_25715 (anthranilate phosphoribosyltransferase)
to HMM TIGR01245 (trpD: anthranilate phosphoribosyltransferase (EC 2.4.2.18))
../bin/blast/fastacmd -i /tmp/list.30435.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.30435.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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