Align 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (characterized)
to candidate Ac3H11_1528 3-isopropylmalate dehydrogenase (EC 1.1.1.85)
Query= BRENDA::Q56268 (358 letters) >FitnessBrowser__acidovorax_3H11:Ac3H11_1528 Length = 357 Score = 403 bits (1036), Expect = e-117 Identities = 219/358 (61%), Positives = 261/358 (72%), Gaps = 10/358 (2%) Query: 3 KIAIFAGDGIGPEIVAAARQVLDAVDQAAHLGLRCTEGLVGGAALDASDDPLPAASLQLA 62 KIA+ GDGIG EIVA A +VL A+D L LVGGAA +A PLP ++L+LA Sbjct: 2 KIAVLPGDGIGTEIVAEAVKVLKALD----LKFEMESALVGGAAYEAHGHPLPESTLKLA 57 Query: 63 MAADAVILGAVGGPRWDAYPPAKRPEQGLLRLRKGLDLYANLRPAQIFPQLLDASPLRPE 122 ADA++ GAVG ++D RPEQ +L LRK L L+AN RPA + QL+ AS L+PE Sbjct: 58 KEADAILFGAVGDWKYDKLDRPLRPEQAILGLRKNLGLFANFRPAICYEQLVGASSLKPE 117 Query: 123 LVRDVDILVVRELTGDIYFGQPRGLEV-----IDGKRRGFNTMVYDEDEIRRIAHVAFRA 177 L+ +DIL++RELTGDIYFGQPRG V G F+TM Y EI RIAHVAF+A Sbjct: 118 LIAGLDILIIRELTGDIYFGQPRGRRVATDGHFPGAEEAFDTMRYSRPEIERIAHVAFQA 177 Query: 178 AQGRRKQLCSVDKANVLETTRLWREVVTEVARDYPDVRLSHMYVDNAAMQLIRAPAQFDV 237 A+ R K++ SVDKANVLET + W++VVT+V ++YPDV L HMYVDNAAMQL++AP FDV Sbjct: 178 ARKRNKKVTSVDKANVLETFQFWKDVVTDVHKEYPDVELQHMYVDNAAMQLVKAPKAFDV 237 Query: 238 LLTGNMFGDILSDEASQLTGSIGMLPSASL-GEGRAMYEPIHGSAPDIAGQDKANPLATI 296 ++TGNMFGDILSDEAS LTGSIGMLPSASL + +YEP HGSAPDIAG+ ANPLATI Sbjct: 238 VVTGNMFGDILSDEASMLTGSIGMLPSASLNSSNQGLYEPSHGSAPDIAGKGVANPLATI 297 Query: 297 LSVAMMLRHSLNAEPWAQRVEAAVQRVLDQGLRTADIAAPGTPVIGTKAMGAAVVNAL 354 LS AMMLR SLN E AQR+EAAVQ+VL QGLRT DI + GT +GT MG AVV AL Sbjct: 298 LSAAMMLRFSLNQEAAAQRIEAAVQKVLAQGLRTPDIYSEGTTKVGTAQMGDAVVKAL 355 Lambda K H 0.320 0.137 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 392 Number of extensions: 13 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 358 Length of database: 357 Length adjustment: 29 Effective length of query: 329 Effective length of database: 328 Effective search space: 107912 Effective search space used: 107912 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 49 (23.5 bits)
Align candidate Ac3H11_1528 (3-isopropylmalate dehydrogenase (EC 1.1.1.85))
to HMM TIGR00169 (leuB: 3-isopropylmalate dehydrogenase (EC 1.1.1.85))
../bin/blast/fastacmd -i /tmp/list.10429.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.10429.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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