GapMind for Amino acid biosynthesis

 

Alignments for a candidate for argC in Acidovorax sp. GW101-3H11

Align N-acetyl-gamma-glutamyl-phosphate reductase; AGPR; EC 1.2.1.38; N-acetyl-glutamate semialdehyde dehydrogenase; NAGSA dehydrogenase (uncharacterized)
to candidate Ac3H11_2950 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)

Query= curated2:B1K264
         (313 letters)



>FitnessBrowser__acidovorax_3H11:Ac3H11_2950
          Length = 312

 Score =  448 bits (1152), Expect = e-131
 Identities = 227/305 (74%), Positives = 251/305 (82%), Gaps = 1/305 (0%)

Query: 4   PTVFIDGDQGTTGLQIHARLRDRTDVRLLTLPAAERKDAARRADALNACDIAILCLPDAA 63
           P VFIDGDQGTTGLQIH RLR RTD+ LLTLP AERK+AARRA+A+N CDIAILCLPD A
Sbjct: 5   PLVFIDGDQGTTGLQIHERLRGRTDLHLLTLPDAERKNAARRAEAINHCDIAILCLPDGA 64

Query: 64  AREAVGFIRNPAVRVIDASSAHRTQPDWVYGFPEMADGHAHDIAHAKRVTNPGCYPTGAI 123
           AREAV  I NPAV+VIDASSAHRT P WVYGFPE+       IA A+RV+NPGCYPTGA+
Sbjct: 65  AREAVTAITNPAVQVIDASSAHRTDPQWVYGFPELDAAQPARIASAQRVSNPGCYPTGAV 124

Query: 124 GLLRPLLQAGLLPRDYPVSIHAVSGYSGGGRAAVDAFESGDAAARALPLQVYGLALEHKH 183
            LLRPL+QAGLL R++ V++HAVSGYSGGGRA V+  E G   A+A   Q+YGL LEHKH
Sbjct: 125 ALLRPLVQAGLLGREHAVTVHAVSGYSGGGRARVEEHE-GPGGAQAPAFQLYGLKLEHKH 183

Query: 184 VPEIRQHAGLAHRPFFVPAYGAYRQGIVLTIPIELRLLPAGVTGERLHACLAHHYADARH 243
            PEI QHAGLA RP FVPAYGA+RQGIVL+IP+ +  LPAG +GERLHACL  HYA A H
Sbjct: 184 TPEIAQHAGLAQRPIFVPAYGAFRQGIVLSIPLFVHQLPAGASGERLHACLQQHYAGAAH 243

Query: 244 VDVMPLADAAAATHLDPQALNGTNDLRLGVLVNADGGQVLLSAVFDNLGKGASGAAVQNL 303
           V+VMPLA A AA HLDPQALNGTN LRLGV  NA  GQVLL+AVFDNLGKGASGAAVQNL
Sbjct: 244 VEVMPLAQAEAAEHLDPQALNGTNQLRLGVFSNARHGQVLLTAVFDNLGKGASGAAVQNL 303

Query: 304 DLMLG 308
           DLMLG
Sbjct: 304 DLMLG 308


Lambda     K      H
   0.322    0.138    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 389
Number of extensions: 19
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 312
Length adjustment: 27
Effective length of query: 286
Effective length of database: 285
Effective search space:    81510
Effective search space used:    81510
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)

Align candidate Ac3H11_2950 (N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38))
to HMM TIGR01851 (argC: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38))

Software error:

../bin/blast/fastacmd -i /tmp/list.422.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.422.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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