Align acetohydroxyacid isomeroreductase (EC 1.1.1.86) (characterized)
to candidate Ac3H11_527 Ketol-acid reductoisomerase (EC 1.1.1.86)
Query= metacyc::MONOMER-18814 (338 letters) >FitnessBrowser__acidovorax_3H11:Ac3H11_527 Length = 338 Score = 540 bits (1390), Expect = e-158 Identities = 263/338 (77%), Positives = 293/338 (86%) Query: 1 MKVFYDKDADLSLIKGKNVTIIGYGSQGHAHALNLKDSGVNVTVGLRKSGASWNKAANAG 60 MKVFYDKD DLSLIKGK V IIGYGSQGHAHA NL DSGV V VGLRK GASW+K AG Sbjct: 1 MKVFYDKDTDLSLIKGKTVAIIGYGSQGHAHAQNLNDSGVKVVVGLRKGGASWDKVGKAG 60 Query: 61 LQVKEVAEAVKGADVVMILLPDEQIADVYKNEVHDNIKEGAALAFAHGFNVHYGAVIPRA 120 L V EV +AVK ADVVMILLPDE IA VYKN V NIK+GA+LAFAHGFNVHY V+PRA Sbjct: 61 LNVLEVNDAVKAADVVMILLPDEDIAAVYKNNVEPNIKQGASLAFAHGFNVHYNQVVPRA 120 Query: 121 DLDVIMIAPKAPGHTVRATYTQGGGVPHLIAVHQNKSGAARDIALSYATANGGGRAGIIE 180 DLDV M+APKAPGHTVR TYTQGGGVPHL+AVHQ+KSG ARD+ALSYA ANGGG+AGIIE Sbjct: 121 DLDVWMVAPKAPGHTVRNTYTQGGGVPHLVAVHQDKSGKARDLALSYAAANGGGKAGIIE 180 Query: 181 TNFREETETDLFGEQAVLCGGTVELIKAGFETLVEAGYAPEMAYFECLHELKLIVDLIYE 240 TNF+EETETDLFGEQAVLCGG VELIK G+ETLVEAGYAPEMAYFECLHELKLIVDLIYE Sbjct: 181 TNFKEETETDLFGEQAVLCGGAVELIKMGYETLVEAGYAPEMAYFECLHELKLIVDLIYE 240 Query: 241 GGIANMNYSISNNAEYGEYVTGPRVVTEETKKAMKQCLTDIQTGEYAKSFLLENKAGAPT 300 GGIANMNYSISNNAEYGEYVTGP V+ E+++ AM+ L IQ G+YAK F+ E + P+ Sbjct: 241 GGIANMNYSISNNAEYGEYVTGPEVINEQSRAAMRNALKRIQNGDYAKMFIQEGRLNYPS 300 Query: 301 LISRRRLTAEHQIEEVGAKLRAMMPWIAKNKMVDQSKN 338 + +RRR TA+H IE+VG++LRAMMPWIAKNK+VDQ++N Sbjct: 301 MTARRRNTADHSIEKVGSQLRAMMPWIAKNKLVDQTRN 338 Lambda K H 0.316 0.133 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 484 Number of extensions: 13 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 338 Length of database: 338 Length adjustment: 28 Effective length of query: 310 Effective length of database: 310 Effective search space: 96100 Effective search space used: 96100 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 49 (23.5 bits)
Align candidate Ac3H11_527 (Ketol-acid reductoisomerase (EC 1.1.1.86))
to HMM TIGR00465 (ilvC: ketol-acid reductoisomerase (EC 1.1.1.86))
../bin/blast/fastacmd -i /tmp/list.9465.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.9465.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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