Align acetylornithine deacetylase (EC 3.5.1.16) (characterized)
to candidate AZOBR_RS31030 AZOBR_RS31030 acetylornithine deacetylase
Query= ecocyc::ACETYLORNDEACET-MONOMER (383 letters) >FitnessBrowser__azobra:AZOBR_RS31030 Length = 398 Score = 173 bits (438), Expect = 9e-48 Identities = 125/375 (33%), Positives = 177/375 (47%), Gaps = 31/375 (8%) Query: 6 PPFIEIYRALIATPSISATEEALDQSNADLITLLADWFKDLG------FNVEVQPVPGTR 59 P +E+ R LIA + S SN DLI + D +LG FN E R Sbjct: 15 PRTLELLRDLIAFDTTSRN------SNLDLIHYIRDHLAELGVSSTLVFNEE-------R 61 Query: 60 NKFNMLASIG-QGAGGLLLAGHTDTVPFDDGRWTRDPFTLTEHDGKLYGLGTADMKGFFA 118 K N+ A+IG GG+ L+GHTD VP DD W+ DPFTLTE DGKL+G GTADMKGF A Sbjct: 62 TKANLYATIGPMDRGGVCLSGHTDVVPVDDQDWSSDPFTLTERDGKLFGRGTADMKGFIA 121 Query: 119 FILDALRDVDVTKLKKPLYILATADEETSMAGARYFAET---TALRPDCAIIGEPTSLQP 175 L D L P++ + DEE G A++P I+GEPT ++ Sbjct: 122 AALAMAPDFLAANLTTPVHYAFSYDEELGCLGVPGLLTQLAGMAVKPRLCIVGEPTRMRV 181 Query: 176 VRAHKGHISNAIRIQGQSGHSSDPARGVNAIELMHDAIGHILQLRDNLKERYHYE-AFTV 234 + HKG ++ R+ G + HSS +GVNA+E + + + + E+ ++ + + Sbjct: 182 IVGHKGKVALRCRVHGHACHSSLAPQGVNAVEYAAELVSFLRGMGRRFAEQGPFDHDYDI 241 Query: 235 PYPTLNLGHIHGGDASNRICACCELHMDIRPLP----GMTLNELNGLLNDALAPVSERWP 290 PY T++ G + GG A N + + +IR L L EL + P Sbjct: 242 PYTTVHTGVMEGGTARNIVPSDASFEFEIRHLADHPVAPMLKELRDFAKTLEPEMRAVRP 301 Query: 291 GRLTVDELHPPIPGYECPPNHQLVEVVEKLLGAKTE-VVNYCTEAPFIQTLC--PTLVLG 347 E P + PP + V +V+ L V + TE ++ P +V G Sbjct: 302 DAGFSWETLSDSPALDTPPESEEVTLVKNLAEQNGHGKVAFGTEGALFTSIANIPAVVCG 361 Query: 348 PGSINQAHQPDEYLE 362 PG I QAH+PDEY+E Sbjct: 362 PGDIEQAHKPDEYVE 376 Lambda K H 0.320 0.139 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 382 Number of extensions: 17 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 383 Length of database: 398 Length adjustment: 31 Effective length of query: 352 Effective length of database: 367 Effective search space: 129184 Effective search space used: 129184 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (23.9 bits)
Align candidate AZOBR_RS31030 AZOBR_RS31030 (acetylornithine deacetylase)
to HMM TIGR01892 (argE: acetylornithine deacetylase (ArgE) (EC 3.5.1.16))
../bin/blast/fastacmd -i /tmp/list.7654.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.7654.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.