Align Aspartate-semialdehyde dehydrogenase 2; ASA dehydrogenase 2; ASADH 2; Aspartate-beta-semialdehyde dehydrogenase 2; EC 1.2.1.11 (characterized)
to candidate AZOBR_RS14735 AZOBR_RS14735 aspartate-semialdehyde dehydrogenase
Query= SwissProt::P23247 (337 letters) >FitnessBrowser__azobra:AZOBR_RS14735 Length = 337 Score = 258 bits (660), Expect = 1e-73 Identities = 149/331 (45%), Positives = 206/331 (62%), Gaps = 12/331 (3%) Query: 7 VAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYR--FNGKTVRVQNVEEFDW 64 VAI GATGAVG M++VL R FPV EL L ASERS G+T F KT+ +VE+ Sbjct: 11 VAIVGATGAVGREMVDVLHRRSFPVAELGLFASERSAGRTVETPFGEKTLVAFDVEKV-- 68 Query: 65 SQVHIALFSAGGELSAKWAPIAAEAGVVVIDNTSHFRYDYDIPLVVPEVNPEAIAEFRNR 124 I L + G+ + + AP A G +VIDN+S FRYD ++PL+VPE+N A+ + + Sbjct: 69 KGYDIVLLAVSGDFAKEHAPAIAAGGALVIDNSSAFRYDDNVPLIVPEINAHAMGDAK-- 126 Query: 125 NIIANPNCSTIQMLVALKPIYDAVGIERINVTTYQSVSGAGKAGIDELAGQTAKLLNGYP 184 +IANPNC+T +VAL P++ A G++R+ V+TYQ+ SGAG G+ EL QT L+G P Sbjct: 127 -LIANPNCTTAIAVVALGPLHKAFGLKRVIVSTYQATSGAGAEGMAELEEQTRNQLDGKP 185 Query: 185 AETNTFSQQIAFNCIPQIDQFMDNGYTKEEMKMVWETQKIFNDPSIMVNPTCVRVPVFYG 244 + F I FN IPQID F +NGYTKEEMK+ WET+KI P + V+ T VR+P + Sbjct: 186 VVNSVFRHPIPFNLIPQIDAFQENGYTKEEMKVTWETRKILEIPDLPVSCTAVRIPTYRA 245 Query: 245 HAEAVHVETRAPIDAEQVMDMLEQTDGI---ELFRGADFPTQVRDAGGKDHVLVGRVRND 301 H+EA+ VET +P+ + +L G+ ++ +P + +A G+ V VGR+R Sbjct: 246 HSEAITVETLSPVTPDAARAVLADAPGVVVKDVPADGVYPMPL-NATGQFDVEVGRIRTS 304 Query: 302 -ISHHSGINLWVVADNVRKGAATNAVQIAEL 331 I G++L+V D + KGAA NAVQIAEL Sbjct: 305 LIFGDHGLDLFVCGDQLLKGAALNAVQIAEL 335 Lambda K H 0.319 0.135 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 300 Number of extensions: 7 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 337 Length of database: 337 Length adjustment: 28 Effective length of query: 309 Effective length of database: 309 Effective search space: 95481 Effective search space used: 95481 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 49 (23.5 bits)
Align candidate AZOBR_RS14735 AZOBR_RS14735 (aspartate-semialdehyde dehydrogenase)
to HMM TIGR01296 (asd: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11))
../bin/blast/fastacmd -i /tmp/list.19823.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.19823.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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