Align Aspartate-semialdehyde dehydrogenase 2; ASA dehydrogenase 2; ASADH 2; Aspartate-beta-semialdehyde dehydrogenase 2; EC 1.2.1.11 (characterized)
to candidate AZOBR_RS13975 AZOBR_RS13975 aspartate-semialdehyde dehydrogenase
Query= SwissProt::P23247 (337 letters) >FitnessBrowser__azobra:AZOBR_RS13975 Length = 339 Score = 280 bits (716), Expect = 4e-80 Identities = 149/336 (44%), Positives = 216/336 (64%), Gaps = 6/336 (1%) Query: 5 FNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTV-RVQNVEEFD 63 + VA+ GATG VG ML L +R FP D + LA++ + GK F V +V++V FD Sbjct: 3 YTVAVVGATGNVGREMLTTLADRRFPADAVIALAADSAVGKEVSFGEDAVLKVEDVGRFD 62 Query: 64 WSQVHIALFSAGGELSAKWAPIAAEAGVVVIDNTSHFRYDYDIPLVVPEVNPEAIAEFRN 123 + V IALF+A ++SA AP A AG VVID + FR D D+PLV+PEVN +A+A + Sbjct: 63 FKGVDIALFAADAKVSAAHAPRGAAAGAVVIDASPQFRMDPDVPLVIPEVNGDALAGYAK 122 Query: 124 RNIIANPNCSTIQMLVALKPIYDAVGIERINVTTYQSVSGAGKAGIDELAGQTAKLLNGY 183 +NI+A+P + I + +ALKP+++ V + R+ V+TYQ+ S AGK G+DEL GQT + Sbjct: 123 KNIVASPGGAAILLAMALKPLHEQVTVSRVVVSTYQAASDAGKEGMDELFGQTRAIYVND 182 Query: 184 PAETNTFSQQIAFNCIPQIDQFMDNGYTKEEMKMVWETQKIFNDPSIMVNPTCVRVPVFY 243 P + + FS+QIAFN IP I FM++G T++E + ET+K+ DP I V+ TCVRVPVF Sbjct: 183 PVQKSVFSKQIAFNVIPHIGPFMEDGATRDEWALTVETKKVL-DPKIKVSATCVRVPVFI 241 Query: 244 GHAEAVHVETRAPIDAEQVMDMLEQTDGIELF---RGADFPTQVRDAGGKDHVLVGRVRN 300 GH+ A+ +E P+ AE+ +L + G+++ + T V + G D V + R+R Sbjct: 242 GHSAAITIECVEPVTAEEARRILRKAPGMQVIDQQENDGYITPV-EIAGDDPVFISRIRE 300 Query: 301 DISHHSGINLWVVADNVRKGAATNAVQIAELLVRDY 336 D + +G++ W DN+RKGAA NAVQIAELLV++Y Sbjct: 301 DYTVDNGLSFWASTDNLRKGAALNAVQIAELLVKEY 336 Lambda K H 0.319 0.135 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 306 Number of extensions: 17 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 337 Length of database: 339 Length adjustment: 28 Effective length of query: 309 Effective length of database: 311 Effective search space: 96099 Effective search space used: 96099 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 49 (23.5 bits)
Align candidate AZOBR_RS13975 AZOBR_RS13975 (aspartate-semialdehyde dehydrogenase)
to HMM TIGR01296 (asd: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11))
../bin/blast/fastacmd -i /tmp/list.28476.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.28476.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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