Align 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (characterized)
to candidate GFF2539 Psest_2589 3-isopropylmalate dehydrogenase
Query= BRENDA::P96197 (360 letters) >FitnessBrowser__psRCH2:GFF2539 Length = 360 Score = 538 bits (1387), Expect = e-158 Identities = 294/365 (80%), Positives = 307/365 (84%), Gaps = 10/365 (2%) Query: 1 MSKQILVLPGDGIGPEIMAEAVKVLQLANEKYQLGFVLGYDELGGAAVDKYGVPLADETL 60 MSKQILVLPGDGIGPEIMAEAVKVLQLAN+K+QL F L YDELGGAAVDKYGVPLADETL Sbjct: 1 MSKQILVLPGDGIGPEIMAEAVKVLQLANDKFQLDFELSYDELGGAAVDKYGVPLADETL 60 Query: 61 ERARRRCHPARRRRRSEMGRHR-PGHPPGARPAENPFAT----GPVRQPAPGVLYPQLAE 115 ERAR A +G + P RP G P +LYPQLAE Sbjct: 61 ERARA----ADAILLGAVGGPKWDTIDPAIRPERGLLKIRSQLGLFGNLRPALLYPQLAE 116 Query: 116 ASTLRPEVVAGLDILIVRELTGGIYFGAPRESRLLANGERMAYDTLPYSESEIRRIAKVG 175 AS+L+PE+VAGLDILIVRELTGGIYFG PRES++L +GERMAYDTLPYSESEIRRIAKVG Sbjct: 117 ASSLKPEIVAGLDILIVRELTGGIYFGQPRESKVLESGERMAYDTLPYSESEIRRIAKVG 176 Query: 176 FDMARVRGKKLCSVDKANVLASSQLWRAVVEEVAKDYPDVVLSHMYVDNAAMQLVRAPKQ 235 FDMA VR KKLCSVDKANVLASSQLWRAVVEEVAK YPDV LSHMYVDNAAMQLVRAPKQ Sbjct: 177 FDMAMVRNKKLCSVDKANVLASSQLWRAVVEEVAKYYPDVELSHMYVDNAAMQLVRAPKQ 236 Query: 236 FDVIVTDNMFGDILSDEASMLTGSIGMLPSASLDADNKGMYEPCHGSRRPDIAGKGIANP 295 FDVIVTDNMFGDILSDEASMLTGSIGMLPSASLDA NKGMYEPCHGS PDIAG+GIANP Sbjct: 237 FDVIVTDNMFGDILSDEASMLTGSIGMLPSASLDAGNKGMYEPCHGS-APDIAGQGIANP 295 Query: 296 LATILSVSMMLRYSFGQVEAANAIEQAVSKVLDQGLRTGDIWSEGCRKVGTAEMGDAVVA 355 LATILSVSMMLRYSF QV AA+AIEQAVS VLDQGLRTGDIWSEGC KVGT MGDAVVA Sbjct: 296 LATILSVSMMLRYSFNQVAAADAIEQAVSDVLDQGLRTGDIWSEGCTKVGTQAMGDAVVA 355 Query: 356 ALATL 360 ALA L Sbjct: 356 ALAKL 360 Lambda K H 0.318 0.135 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 499 Number of extensions: 12 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 360 Length of database: 360 Length adjustment: 29 Effective length of query: 331 Effective length of database: 331 Effective search space: 109561 Effective search space used: 109561 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 49 (23.5 bits)
Align candidate GFF2539 Psest_2589 (3-isopropylmalate dehydrogenase)
to HMM TIGR00169 (leuB: 3-isopropylmalate dehydrogenase (EC 1.1.1.85))
../bin/blast/fastacmd -i /tmp/list.26706.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.26706.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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