Align Pyrroline-5-carboxylate reductase; P5C reductase; P5CR; PCA reductase; EC 1.5.1.2 (characterized)
to candidate GFF282 Psest_0283 pyrroline-5-carboxylate reductase
Query= SwissProt::P22008 (273 letters) >FitnessBrowser__psRCH2:GFF282 Length = 274 Score = 389 bits (998), Expect = e-113 Identities = 207/274 (75%), Positives = 235/274 (85%), Gaps = 1/274 (0%) Query: 1 MSTPRIAFIGAGNMAASLIGGLRAQGVPAAQIRASDPGAEQRAKIAGEFAIDVVESNAEA 60 M +PRIAFIGAGNMAASLIGGLRAQGV A IRASDPGAEQRAKI+ E I NA+A Sbjct: 1 MISPRIAFIGAGNMAASLIGGLRAQGVAAEAIRASDPGAEQRAKISAEHGIQTFAQNADA 60 Query: 61 VADADVVVLSVKPQAMKAVCQALAPALKPEQLIVSIAAGIPCASLEAWLG-QPRPVVRCM 119 +A ADVVVLSVKPQ M++VC+ L P L LIVSIAAGI C SL+ WLG +P+ +VRCM Sbjct: 61 LAGADVVVLSVKPQVMQSVCRDLVPHLDHAPLIVSIAAGISCDSLQRWLGPRPQAIVRCM 120 Query: 120 PNTPALLRQGASGLYANAQVSAAQCEQAGQLLSAVGIALWLDDEAQIDAVTAVSGSGPAY 179 PNTPALLRQG SGL+ANAQVSA Q +QA QLLSAVGIALWL++E IDAVTAVSGSGPAY Sbjct: 121 PNTPALLRQGVSGLFANAQVSAEQKQQAEQLLSAVGIALWLEEERLIDAVTAVSGSGPAY 180 Query: 180 FFLLMQAMTDAGEKLGLSRETASRLTLQTALGAAQMALSSEVEPAELRRRVTSPNGTTEA 239 FFLL++AMT AGE+LGL R+TA++LT+QTALGAA+MA S+V+ AELRRRVTSPNGTTEA Sbjct: 181 FFLLIEAMTAAGEQLGLPRDTAAQLTMQTALGAARMACESDVDAAELRRRVTSPNGTTEA 240 Query: 240 AIKSFQANGFEALVEQALNAASQRSAELAEQLGQ 273 AIK+FQA GFE LV+QALNAA+QRSAELAEQLGQ Sbjct: 241 AIKAFQAGGFERLVQQALNAAAQRSAELAEQLGQ 274 Lambda K H 0.315 0.127 0.348 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 291 Number of extensions: 6 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 273 Length of database: 274 Length adjustment: 25 Effective length of query: 248 Effective length of database: 249 Effective search space: 61752 Effective search space used: 61752 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 47 (22.7 bits)
Align candidate GFF282 Psest_0283 (pyrroline-5-carboxylate reductase)
to HMM TIGR00112 (proC: pyrroline-5-carboxylate reductase (EC 1.5.1.2))
../bin/blast/fastacmd -i /tmp/list.20211.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.20211.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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