Align Aspartate-semialdehyde dehydrogenase; ASA dehydrogenase; ASADH; Aspartate-beta-semialdehyde dehydrogenase; EC 1.2.1.11 (characterized)
to candidate GFF2538 Psest_2588 aspartate-semialdehyde dehydrogenase, gamma-proteobacterial
Query= SwissProt::Q51344 (370 letters) >FitnessBrowser__psRCH2:GFF2538 Length = 370 Score = 683 bits (1763), Expect = 0.0 Identities = 336/370 (90%), Positives = 356/370 (96%) Query: 1 MKRVGLIGWRGMVGSVLMQRMLEERDFDLIEPVFFTTSNVGGQGPEVGKDIAPLKDAYSI 60 MKRVGLIGWRGMVGSVLMQRMLEERDFDLIEPVFFTTSNVGGQGP++GK+ A LKDAYSI Sbjct: 1 MKRVGLIGWRGMVGSVLMQRMLEERDFDLIEPVFFTTSNVGGQGPDIGKETAALKDAYSI 60 Query: 61 DELKTLDVILTCQGGDYTSEVFPKLREAGWQGYWIDAASSLRMEDDAVIVLDPVNRKVID 120 DELK LDVILTCQGGDYT+EVFPKLREAGWQGYWIDAASSLRM+DDAVIVLDPVNR+VID Sbjct: 61 DELKGLDVILTCQGGDYTNEVFPKLREAGWQGYWIDAASSLRMQDDAVIVLDPVNRRVID 120 Query: 121 QALDAGTRNYIGGNCTVSLMLMALGGLFDAGLVEWMSAMTYQAASGAGAQNMRELLKQMG 180 Q LDAGT+NYIGGNCTVSL LM LGGLF+AGLVEWMSAMTYQAASGAGAQNMREL+KQMG Sbjct: 121 QQLDAGTKNYIGGNCTVSLALMGLGGLFEAGLVEWMSAMTYQAASGAGAQNMRELIKQMG 180 Query: 181 AAHASVADDLANPASAILDIDRKVAETLRSEAFPTEHFGAPLGGSLIPWIDKELPNGQSR 240 A +A+VADDLANPASAILDIDRKVAET RSEAFP ++FG PL GSLIP+IDKELPNGQSR Sbjct: 181 AINAAVADDLANPASAILDIDRKVAETQRSEAFPVDNFGVPLAGSLIPYIDKELPNGQSR 240 Query: 241 EEWKAQAETNKILARFKNPIPVDGICVRVGAMRCHSQALTIKLNKDVPLTDIEGLISQHN 300 EEWKAQAETNKIL RFKNPIPVDGICVRVGAMRCHSQALTIKLNKDVP++DIEGLISQHN Sbjct: 241 EEWKAQAETNKILGRFKNPIPVDGICVRVGAMRCHSQALTIKLNKDVPISDIEGLISQHN 300 Query: 301 PWVKLVPNHREVSVRELTPAAVTGTLSVPVGRLRKLNMGSQYLGAFTVGDQLLWGAAEPL 360 PWVKLVPNHR+ S++EL+PAAVTGTLSVPVGRLRKLNMGS YLGAFTVGDQLLWGAAEPL Sbjct: 301 PWVKLVPNHRDASMQELSPAAVTGTLSVPVGRLRKLNMGSHYLGAFTVGDQLLWGAAEPL 360 Query: 361 RRMLRILLER 370 RRMLRILLER Sbjct: 361 RRMLRILLER 370 Lambda K H 0.319 0.136 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 634 Number of extensions: 14 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 370 Length of database: 370 Length adjustment: 30 Effective length of query: 340 Effective length of database: 340 Effective search space: 115600 Effective search space used: 115600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 49 (23.5 bits)
Align candidate GFF2538 Psest_2588 (aspartate-semialdehyde dehydrogenase, gamma-proteobacterial)
to HMM TIGR01745 (asd: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11))
../bin/blast/fastacmd -i /tmp/list.6533.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.6533.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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