Align Phosphoribosyl-AMP cyclohydrolase; PRA-CH; EC 3.5.4.19 (characterized)
to candidate PfGW456L13_302 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19)
Query= SwissProt::O26347 (138 letters) >FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_302 Length = 133 Score = 124 bits (312), Expect = 4e-34 Identities = 62/121 (51%), Positives = 80/121 (66%), Gaps = 3/121 (2%) Query: 19 NGEDLIIAVAQDHETGEVLMVAYMNREALRRTLETGTAHYWSTSRGKLWLKGESSGHVQR 78 + + L+ A+AQDH+TG VLM+A+MNREAL T A YWS SRGKLW KGE SGHVQ Sbjct: 11 DADGLVPAIAQDHKTGRVLMMAWMNREALELTAAENRAIYWSRSRGKLWRKGEESGHVQT 70 Query: 79 VKDVLVDCDGDAVVLKVEQEGG-ACHTGYRSCFYRSIDGDELKVREDAVKVFDPEEIYGD 137 + ++ +DCD D ++L VEQ G ACHTG +SCFYR + + + +K DP IY Sbjct: 71 LHEMRLDCDADVIILMVEQIGDIACHTGRQSCFYRVYENGDWTTVDPVLK--DPHAIYSA 128 Query: 138 G 138 G Sbjct: 129 G 129 Lambda K H 0.318 0.137 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 101 Number of extensions: 5 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 138 Length of database: 133 Length adjustment: 15 Effective length of query: 123 Effective length of database: 118 Effective search space: 14514 Effective search space used: 14514 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 42 (20.8 bits)
Align candidate PfGW456L13_302 (Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19))
to HMM PF01502 (PRA-CH)
../bin/blast/fastacmd -i /tmp/list.14126.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.14126.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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