Align Imidazole glycerol phosphate synthase subunit HisF; IGP synthase cyclase subunit; IGP synthase subunit HisF; ImGP synthase subunit HisF; IGPS subunit HisF; EC 4.3.2.10 (characterized)
to candidate PfGW456L13_358 Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-)
Query= SwissProt::Q7SIB9 (252 letters) >FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_358 Length = 256 Score = 289 bits (740), Expect = 3e-83 Identities = 150/256 (58%), Positives = 190/256 (74%), Gaps = 6/256 (2%) Query: 1 MSLAKRIVPCLDVHAGRVVKGVNFVNLRDAGDPVEAARAYDEAGADELVFLDISATHEER 60 M+LAKRI+PCLDV GRVVKGV F N+RDAGDPVE AR YDE GADE+ FLDI+A+ + R Sbjct: 1 MALAKRIIPCLDVDNGRVVKGVKFENIRDAGDPVEIARRYDEQGADEITFLDITASVDGR 60 Query: 61 AILLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGADKVSVNSAAVRRPELIRELADH 120 L V R+A +VFIPLTVGGGVR+++D R LL +GADKVS+N+AAV PE + E A H Sbjct: 61 DTTLHTVERMASQVFIPLTVGGGVRTVQDIRNLLNAGADKVSINTAAVFNPEFVGEAAQH 120 Query: 121 FGAQAVVLAIDAR---WRGDFP--EVHVAGGRVPTGLHAVEWAVKGVELGAGEILLTSMD 175 FG+Q +V+AIDA+ G+ P E+ GGR PTGL AVEWA K LGAGEILLTSMD Sbjct: 121 FGSQCIVVAIDAKKVSGPGETPRWEIFTHGGRKPTGLDAVEWAKKMEGLGAGEILLTSMD 180 Query: 176 RDGTKEGYDLRLTRMVAEAVGVPVIASGGAGRMEHFLEAFQAG-AEAALAASVFHFGEIP 234 +DG K G+DL +TR +++A+G+PVIASGG G ++H + G A A LAAS+FHFGE Sbjct: 181 QDGMKNGFDLGVTRAISDALGIPVIASGGVGNLQHLADGIIEGHASAVLAASIFHFGEYT 240 Query: 235 IPKLKRYLAEKGVHVR 250 + + K Y+A +G+ +R Sbjct: 241 VQEAKAYMAHRGIVMR 256 Lambda K H 0.321 0.138 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 244 Number of extensions: 14 Number of successful extensions: 5 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 252 Length of database: 256 Length adjustment: 24 Effective length of query: 228 Effective length of database: 232 Effective search space: 52896 Effective search space used: 52896 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 47 (22.7 bits)
Align candidate PfGW456L13_358 (Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-))
to HMM TIGR00735 (hisF: imidazoleglycerol phosphate synthase, cyclase subunit)
../bin/blast/fastacmd -i /tmp/list.9051.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.9051.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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